View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13050_low_9 (Length: 295)
Name: NF13050_low_9
Description: NF13050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13050_low_9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 13882904 - 13882629
Alignment:
| Q |
16 |
ctgtgagaattttttatgaaagtgagggtagtagtcctggtgttggtgcgggtgcctaccatagtgaaaccaaaaccatataaatacttctacagatggt |
115 |
Q |
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| T |
13882904 |
ctgtgagaatttta-atgaaagtgagggtagtagtcctggtgttggtgcgggtgcctaccatagtgaaaccaaaaccatataaatacttctacagatg-- |
13882808 |
T |
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| Q |
116 |
gatcaatgttacccatgacatcactcaatttctagagaagataaatgtcttgatttagaccgtactgtgcgtaaaaatgaaactccatggtaagctgtta |
215 |
Q |
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| T |
13882807 |
-atcaatgtgacccatgacatcactcaatttctagagaagataaatgtcttgatttagaccgtactgtgcgtaaaaatgaaactctatggtaagctgtta |
13882709 |
T |
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| Q |
216 |
gtgaaagctaatgtcatttctttgttaattgtgtttatggtactaagtgatcaccatcatttccttgttaattgtgttta |
295 |
Q |
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| T |
13882708 |
gtgaaagctaatgtcatttctttgttaattgtgtttatggtactaagtgatcaccatcatttccttgttaattgtgttta |
13882629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 13884737 - 13884698
Alignment:
| Q |
70 |
cctaccatagtgaaaccaaaaccatataaatacttctaca |
109 |
Q |
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| T |
13884737 |
cctaccatagtgaaaccaaaaccatataaatacttctaca |
13884698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 13882652 - 13882603
Alignment:
| Q |
229 |
tcatttctttgttaattgtgtttatggtactaagtgatcaccatcatttc |
278 |
Q |
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| T |
13882652 |
tcatttccttgttaattgtgtttatgataccaagtgatcaacatcatttc |
13882603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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