View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13051_high_11 (Length: 344)
Name: NF13051_high_11
Description: NF13051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13051_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 29671863 - 29672179
Alignment:
| Q |
18 |
aaacagaaacactctggtgcatcaatccaaatcatctcagaagaatcttcagcattctttgataaaaccccgaacctcgagactttctccttatcgtaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29671863 |
aaacagaaacactctggtgcatcaatccaaatcatctcagaagaatcttcagcattcttggataaaaccccgaacctcgagactttctccttatcgtaaa |
29671962 |
T |
|
| Q |
118 |
caacaggcgacccaccacggatcatttcacccaatttaaacacaacttgttgatcaggcacaacaacgaaattctcagtgatcgcgaagtcatgcatcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29671963 |
caacaggcgacccaccacggatcatttcacccaatttaaacacaacttgttgatcaggcacaacaacgaaattctcagtgatcgcgaagtcatgcatcat |
29672062 |
T |
|
| Q |
218 |
agtaggctgctccaacggaatctcaacgtccggagacttaactccggacgcatcaaaacgaaagtatttcaaataaggcttttgaactacgtcatagctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672063 |
agtaggctgctccaacggaatctcaacgtccggagacttaactccggacgcatcaaaacgaaagtatttcaaataaggcttttgaactacgtcatagctc |
29672162 |
T |
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| Q |
318 |
aaagcatacatattctt |
334 |
Q |
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||||||||||||||||| |
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| T |
29672163 |
aaagcatacatattctt |
29672179 |
T |
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