View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13051_high_17 (Length: 230)
Name: NF13051_high_17
Description: NF13051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13051_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 36935052 - 36934842
Alignment:
| Q |
1 |
gttggatttaacatcgaaaacagcagaaacattgtttgaaggagacggtggtagttttgttcnnnnnnnnnnnnnnggagacggtggtagttactacgtt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36935052 |
gttggatttaacaccgaaaacagcagaaacattgtttgaaggagacggtggtagttttgttcaaaaaaaataaaa-ggagacggtggtagttactacgtt |
36934954 |
T |
|
| Q |
101 |
tggtcgagttctcaaatgccagtgttagcctcaaccaacgttggtgctggtcgccttgtgcttaagcctcaaggctttgctcttcctcattatgcagatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36934953 |
tggtcgagttctcaaatgccagtgttagcctcaaccaacgttggtgctggtcgccttgtgcttaagcctcaaggctttgctcttcctcattatgcagatt |
36934854 |
T |
|
| Q |
201 |
cctctaaagttg |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36934853 |
cctctaaagttg |
36934842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University