View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13051_low_11 (Length: 382)

Name: NF13051_low_11
Description: NF13051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13051_low_11
NF13051_low_11
[»] chr1 (1 HSPs)
chr1 (24-382)||(36377040-36377382)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 24 - 382
Target Start/End: Complemental strand, 36377382 - 36377040
Alignment:
Q  24 ggagcgatgcagctgctattcaagcagcagaagtcagagccacagggcgcactaacatcgtccctggaggtgttgccgcggcagcacaatcagccgcaac 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36377382 ggagcgatgcagctgctattcaagcagcagaagtcagagccacagggcgcactaacatcgtccctggaggtgttgccgcggcagcacaatcagctgcaac 36377283  T
Q  124 tctcaatgctcgaaccacaaaggaagaggacaagaccaaacttggtgatattcttgcggtacataccagacannnnnnnacatttaaagagtcttgctac 223  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||          |||||||||||||||||| ||    
T  36377282 tctcaatgctcgaaccacaaaggaagaggacaagaccaaactcggtgatattcttgcggtacataccag----------acatttaaagagtcttgcaac 36377193  T
Q  224 aaaagttatacacactaaatacttgaaagtgcagaattgcagatttaaatctgcgctccaacatcaaacatctttgcagttattttttactatctgcaca 323  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  36377192 aaaagttatacacactaaatacttgaaagtgcagagttgcagatttaaatccgctctccaacatcaaacatctttgcagttattttttactatccgcaca 36377093  T
Q  324 tacaagaattttaggttgctaatatatttgaattgttataatgatgcaggacgcgacta 382  Q
    ||||||||||||||||      |||||||||||||||||||||||||||||||||||||    
T  36377092 tacaagaattttaggt------tatatttgaattgttataatgatgcaggacgcgacta 36377040  T

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