View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13051_low_17 (Length: 261)
Name: NF13051_low_17
Description: NF13051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13051_low_17 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 14563206 - 14562955
Alignment:
| Q |
10 |
acatcatcacgattttgcatttttattctttattatatcatcttggtggttaagtgtgaaacatgtggttttatatatgctttgtttttcaattaagagt |
109 |
Q |
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| T |
14563206 |
acatgatcacgattttgcatttttattctttattatatcatcttggtggttaagtgtgaaacatgtggttttatatatgctttgtttttcaattaagagt |
14563107 |
T |
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| Q |
110 |
gatcttaattgaatagttggtttcaacctctcgtcccaatccccaacatatttttgcttctcatatactaaaagtcttaggaaaatgttaatcagtgtct |
209 |
Q |
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| T |
14563106 |
gatcttaattgaatagttggtttcaacctcttgtcccaatccccaacatatttttgcttctcatatactaaaagtcttaggaaaatgttaatcagtgtct |
14563007 |
T |
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| Q |
210 |
tggttaagaaataaattataataatattttacttcaagttgtatagtcaatc |
261 |
Q |
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| T |
14563006 |
tggttaaggaacaaattataataatattttatttcaagttgtatagtcaatc |
14562955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 14561861 - 14561699
Alignment:
| Q |
21 |
attttgcatttttattctttattatatcatcttggtggttaagtgtgaaacatgtggtttta---tatatgctttgtttttcaattaagagtgatcttaa |
117 |
Q |
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| T |
14561861 |
attttccatttttattctttcttatatcat---ggtggtaaagtgtgaaacatgtgattatactatatattctttgtttttca-ttaagagtgatcttaa |
14561766 |
T |
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| Q |
118 |
ttgaatagttggtttcaacctctcgtcccaatccccaacatatttttgcttctcatatactaaaagt |
184 |
Q |
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| T |
14561765 |
ttgagtagttggtttaaacattttgtcccaatccccaacatatgtttgtttctcatatactaaaagt |
14561699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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