View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13051_low_18 (Length: 250)
Name: NF13051_low_18
Description: NF13051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13051_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 15802557 - 15802317
Alignment:
| Q |
1 |
ctgaggcttcttccaaacctgtgtaagattactgtgttttaagtccatagcaactacatttttctgataaaagttttctggcatgtattttaaaggaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15802557 |
ctgaggcttcttccaaacctgtgtaagattactgtgttttaagtccatagcaactacatttttctgataaaagttttctggcatgtattttaaaggaaat |
15802458 |
T |
|
| Q |
101 |
ccttgccaagaaagccatctcaactgcttcgaaaaacactcataatctccaatgacttgtacattatcaagttgcaacaatcgcaatttcttcattttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15802457 |
ccttgccaagaaagccatctcaactgcttcgaaaaacactcataatctccgatgacttgtacattatcaagttgcaacaatcgcaatttcttcattttct |
15802358 |
T |
|
| Q |
201 |
taaaagcaattgtattgaagcaaactctactggtcctttgc |
241 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15802357 |
taagagcaattgtattgaagcaaactctactggtcctttgc |
15802317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 3392085 - 3392319
Alignment:
| Q |
1 |
ctgaggcttcttccaaacctgtgtaagattactgtgttttaagtccatagcaactacatttttctgataaaagttttctggcatgtattttaaaggaaat |
100 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
3392085 |
ctgaggcttcttccaaacttgtgtgagattactgtgttttaagtccatagcaactacatttttctgataaaagttttctggtgtgtattttaatggaaat |
3392184 |
T |
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| Q |
101 |
ccttgccaagaaagccatctcaactgcttcgaaaaacactcataatctccaatgacttgtacattatcaagttgcaacaatcgcaatttcttcattttct |
200 |
Q |
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|||||||||||||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
3392185 |
ccttgccaagaaagccatctcaggtgctttgaaaaacacttgtaatctccgatgacttgtacattatcaagttgcaacaatctcaatctcttcattttct |
3392284 |
T |
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| Q |
201 |
taaaagcaattgtattgaagcaaactctactggtc |
235 |
Q |
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|||||||||||||| |||||||||||| ||||| |
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| T |
3392285 |
caaaagcaattgtatcaaagcaaactctattggtc |
3392319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 3314488 - 3314248
Alignment:
| Q |
1 |
ctgaggcttcttccaaacctgtgtaagattactgtgttttaagtccatagcaactacatttttctgataaaagttttctggcatgtattttaaaggaaat |
100 |
Q |
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||||||| | |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3314488 |
ctgaggccttttccaaacttgtgtaagattactgtgttttaagtccatagcaactagatttttctgataaaagttttctggcatgtattttaaaggaaat |
3314389 |
T |
|
| Q |
101 |
ccttgccaagaaagccatctcaactgcttcgaaaaacactcataatctccaatgacttgtacattatcaagttgcaacaatcgcaatttcttcattttct |
200 |
Q |
| |
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||||||||||||||||| |||| || || |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| |
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| T |
3314388 |
ccttgccaagaaagccaactcaggtgttttgaaaaacactcatagtctccaatgacttgtacatgatcaagttgcaacaatctcaatctcttcattttct |
3314289 |
T |
|
| Q |
201 |
taaaagcaattgtattgaagcaaactctactggtcctttgc |
241 |
Q |
| |
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|||| | |||| || ||| | ||||||||||| ||||||| |
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| T |
3314288 |
caaaaccgattgcatcgaaaccaactctactggacctttgc |
3314248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3363799 - 3363565
Alignment:
| Q |
1 |
ctgaggcttcttccaaacctgtgtaagattactgtgttttaagtccatagcaactacatttttctgataaaagttttctggcatgtattttaaaggaaat |
100 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||| |||||| |
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| T |
3363799 |
ctgaggcttcttccagacttgtgcgagattactgtgttttaactccatagctactagatttttctgataaaagttttctggggtgtattttaatggaaat |
3363700 |
T |
|
| Q |
101 |
ccttgccaagaaagccatctcaactgcttcgaaaaacactcataatctccaatgacttgtacattatcaagttgcaacaatcgcaatttcttcattttct |
200 |
Q |
| |
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|||||||||||||||||||||| ||||| | |||||||| |||||||| ||||||||||||||||||||||||||||||| |||| | ||||||||| |
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| T |
3363699 |
ccttgccaagaaagccatctcagatgctttggaaaacacttgtaatctccgatgacttgtacattatcaagttgcaacaatctcaatctaatcattttct |
3363600 |
T |
|
| Q |
201 |
taaaagcaattgtattgaagcaaactctactggtc |
235 |
Q |
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|||||||||||||| |||||||||||| ||||| |
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| T |
3363599 |
caaaagcaattgtatcaaagcaaactctattggtc |
3363565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 32411638 - 32411854
Alignment:
| Q |
12 |
tccaaacctgtgtaagattactgtgttttaagtccatagcaactacatttttctgataaaagttttctggcatgtattttaaaggaaatccttgccaaga |
111 |
Q |
| |
|
||||||| ||| ||| ||| ||||||||||||||||||||||| | |||| ||||||||||| || || || | || |||| |||||||||||| |
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| T |
32411638 |
tccaaacttgtctaatattgctgtgttttaagtccatagcaacaagatttccctgataaaagtcatccggtatattgttgaaagtaaatccttgccattt |
32411737 |
T |
|
| Q |
112 |
aagccatctcaactgcttcgaaaaacactcataatctccaatgacttgtacattatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaatt |
211 |
Q |
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| |||||||| || || |||||||| ||||| |||||||||| | ||| ||||||||| || | || | ||||||||||| ||| |||| | | |
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| T |
32411738 |
gacccatctcagttgattggaaaaacaatcatagtctccaatgaggttaacacaatcaagttgtaaaagtcttagtttcttcatttccttgaaagaatta |
32411837 |
T |
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| Q |
212 |
gtattgaagcaaactct |
228 |
Q |
| |
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||| ||||||||||||| |
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| T |
32411838 |
gtactgaagcaaactct |
32411854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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