View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13051_low_19 (Length: 243)

Name: NF13051_low_19
Description: NF13051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13051_low_19
NF13051_low_19
[»] chr5 (4 HSPs)
chr5 (1-225)||(15802611-15802835)
chr5 (79-221)||(30417598-30417740)
chr5 (80-223)||(20812056-20812199)
chr5 (80-223)||(20838411-20838554)
[»] chr8 (14 HSPs)
chr8 (27-225)||(3391813-3392011)
chr8 (1-225)||(3363869-3364093)
chr8 (1-221)||(3314558-3314778)
chr8 (76-221)||(31175622-31175767)
chr8 (76-225)||(3407600-3407749)
chr8 (14-225)||(7164930-7165141)
chr8 (76-225)||(3286792-3286941)
chr8 (76-224)||(3267476-3267624)
chr8 (16-225)||(13787161-13787370)
chr8 (80-223)||(3398799-3398942)
chr8 (21-153)||(13808425-13808557)
chr8 (64-225)||(3262903-3263064)
chr8 (15-194)||(3374792-3374971)
chr8 (82-225)||(3325277-3325421)
[»] chr3 (3 HSPs)
chr3 (76-225)||(6906083-6906232)
chr3 (14-126)||(32411434-32411546)
chr3 (176-225)||(32411357-32411406)
[»] chr7 (1 HSPs)
chr7 (79-221)||(8371940-8372082)
[»] chr2 (1 HSPs)
chr2 (15-225)||(14767224-14767434)
[»] scaffold0468 (1 HSPs)
scaffold0468 (76-225)||(6423-6572)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15802611 - 15802835
Alignment:
Q  1 attttgcatcttattctctaatttttatttaaaacatttattttcttgtagttgatagagggactgaagatcctaaatctcagtcattctaagtacttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15802611 attttgcatcttattctctaatttttatttaaaacatttattttcttgtagttgatagagggactgaagatcctaaatctcagtcattctaagtacttga 15802710  T
Q  101 aaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacacccgtccattggagatctcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15802711 aaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacacccgtccattggagatctcaa 15802810  T
Q  201 caatcttcttctgataaatttgaag 225  Q
    |||||||||||||||||||||||||    
T  15802811 caatcttcttctgataaatttgaag 15802835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 30417598 - 30417740
Alignment:
Q  79 ctcagtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtac 178  Q
    ||||||||||| |||||||||||||  |||||  ||||||||  |||||| |  ||||||||||| |||||||||||||||| |||| |||  |||||||    
T  30417598 ctcagtcattccaagtacttgaaaaacacccctaacttttcattattaccgagtctagaaaagctcattatgaaggattgtccaagtttgtccgaggtac 30417697  T
Q  179 acccgtccattggagatctcaacaatcttcttctgataaattt 221  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  30417698 acccgtccattggagatctcaataatcttcttctgataaattt 30417740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 20812056 - 20812199
Alignment:
Q  80 tcagtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtaca 179  Q
    ||||||||  ||||||||||||||  ||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||  ||  || | ||||||||    
T  20812056 tcagtcataataagtacttgaaaatcaccccagacttttcaaaattaccgaatctagaaaagctcattatgaaggactgtccgagcttgattgaggtaca 20812155  T
Q  180 cccgtccattggagatctcaacaatcttcttctgataaatttga 223  Q
    || ||||||||| || ||||| ||| |  |||||||||||||||    
T  20812156 ccagtccattggggacctcaagaatatcgttctgataaatttga 20812199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 20838411 - 20838554
Alignment:
Q  80 tcagtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtaca 179  Q
    ||||||||  ||||||||||||||  ||||| ||||||||||||||||| || ||||||||||| ||||||| ||| ||||  ||  || | ||||||||    
T  20838411 tcagtcataataagtacttgaaaatcaccccagacttttcaaaattaccgaatctagaaaagctcattatgatggaatgtccgagcttgattgaggtaca 20838510  T
Q  180 cccgtccattggagatctcaacaatcttcttctgataaatttga 223  Q
    || ||||||||| || ||||| ||| |  |||||||||||||||    
T  20838511 ccagtccattggggacctcaagaatatcgttctgataaatttga 20838554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 27 - 225
Target Start/End: Complemental strand, 3392011 - 3391813
Alignment:
Q  27 atttaaaacatttattttcttgtagttgatagagggactgaagatcctaaatctcagtcattctaagtacttgaaaagaacccccgacttttcaaaatta 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  3392011 atttaaaacatttattttcttgtagttgatagagggactgaagatcctaaatctcagtcattctaagtacttgaaaagaacccctgacttttcaaagtta 3391912  T
Q  127 ccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacacccgtccattggagatctcaacaatcttcttctgataaatttgaag 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  3391911 ccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacacccgtccattggagatctcaagaatcttcttctgttaaatttgaag 3391813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3363869 - 3364093
Alignment:
Q  1 attttgcatcttattctctaatttttatttaaaacatttattttcttgtagttgatagagggactgaagatcctaaatctcagtcattctaagtacttga 100  Q
    ||||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  3363869 atttttcattttattctctaacttttgtttaaaacatttattttcttgtagttgatagaggggctgaagatcctaaatctcagtcattctaagaacttga 3363968  T
Q  101 aaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacacccgtccattggagatctcaa 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  3363969 aaagaacccctgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtttgctggaggtacacccgtccattggagatctcaa 3364068  T
Q  201 caatcttcttctgataaatttgaag 225  Q
     ||||||||| || |||||||||||    
T  3364069 gaatcttcttatgttaaatttgaag 3364093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3314558 - 3314778
Alignment:
Q  1 attttgcatcttattctctaatttttatttaaaacatttattttcttgtagttgatagagggactgaagatcctaaatctcagtcattctaagtacttga 100  Q
    ||||||||||||  ||||||||||| |||||||| ||| |||||||||||| || |||||||||||||||||||||||||||||||||| | ||||||||    
T  3314558 attttgcatctttatctctaattttaatttaaaatattaattttcttgtagatgctagagggactgaagatcctaaatctcagtcattcaatgtacttga 3314657  T
Q  101 aaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacacccgtccattggagatctcaa 200  Q
     ||| ||||| ||||||||||||||||| ||||||||||| || |||||||| |||||||||||| |||| || |||||| |||||||||||||||||||    
T  3314658 caagcacccctgacttttcaaaattaccgaacctagaaaatctcattatgaaagattgtcaaagtttgtttgaagtacactcgtccattggagatctcaa 3314757  T
Q  201 caatcttcttctgataaattt 221  Q
     || ||||| |||||||||||    
T  3314758 gaagcttctcctgataaattt 3314778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 31175622 - 31175767
Alignment:
Q  76 aatctcagtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggagg 175  Q
    ||||||||||||||||||||||||||||| || || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||  ||||    
T  31175622 aatctcagtcattctaagtacttgaaaagcactcctgactttgcaaaattaccaaatctagaaaagctaattatgaaggattgtcaaagtttgtccgagg 31175721  T
Q  176 tacacccgtccattggagatctcaacaatcttcttctgataaattt 221  Q
    | ||| ||||||||||||||||||| ||||||||| ||||||||||    
T  31175722 tgcacacgtccattggagatctcaagaatcttcttttgataaattt 31175767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 3407749 - 3407600
Alignment:
Q  76 aatctcagtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggagg 175  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||||||||||| || |||||||| || ||||||||||||||||||||| | |  ||      
T  3407749 aatctcagtcattccaagcacttgaaaagaacccctgacttttcaaaattaccgaatctagaaaaactcattatgaaggattgtcaaagtttatccgaca 3407650  T
Q  176 tacacccgtccattggagatctcaacaatcttcttctgataaatttgaag 225  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  3407649 tacacccgtccattggagatctcaagaatcttcttctcataaatttgaag 3407600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 7165141 - 7164930
Alignment:
Q  14 ttctctaatttttatttaaaacatttattttcttgtagttgatagagggactgaagatcctaaatctcagtcattctaagtacttgaaaagaacccccga 113  Q
    ||||||| ||||||||| |||| ||||| |||||| ||||  | |||   || || || || |||||||||||||||| ||||||||||   ||||| ||    
T  7165141 ttctctattttttattttaaacgtttatcttcttgcagtttctggagaagctaaaaattcttaatctcagtcattctaggtacttgaaacacacccctga 7165042  T
Q  114 cttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacacccgtccattggagatctcaacaatcttcttctg 213  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||| |||| |||  ||||| || | |||||||||||||||||| ||| |||| ||     
T  7165041 cttttcaaaattaccaaatctagaaaagcttattatgaaagattgtccaagtttgtccgaggtgcatcagtccattggagatctcaagaatgttctacta 7164942  T
Q  214 ataaatttgaag 225  Q
    ||||||||||||    
T  7164941 ataaatttgaag 7164930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 3286941 - 3286792
Alignment:
Q  76 aatctcagtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggagg 175  Q
    ||||| |||||||| |  ||||||| |||  |||| || ||||||||||||||||| || |||||||| |||||||||||||||| |||| |||  ||||    
T  3286941 aatctaagtcattcgagatacttgacaagctccccggatttttcaaaattaccaaatcttgaaaagctcattatgaaggattgtccaagtttgtctgagg 3286842  T
Q  176 tacacccgtccattggagatctcaacaatcttcttctgataaatttgaag 225  Q
    ||||||| ||||||||||||||||| || |||||| || |||||||||||    
T  3286841 tacacccatccattggagatctcaataaacttcttatgttaaatttgaag 3286792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 3267624 - 3267476
Alignment:
Q  76 aatctcagtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggagg 175  Q
    |||||||||||||| |||||||||| ||| || || ||||||||||||||||| || ||||||||||| ||||||||||| |||| |||  |||  ||||    
T  3267624 aatctcagtcattccaagtacttgacaagcactcctgacttttcaaaattaccgaatctagaaaagctcattatgaaggactgtccaagcttgtctgagg 3267525  T
Q  176 tacacccgtccattggagatctcaacaatcttcttctgataaatttgaa 224  Q
    |||||| ||| ||||| | ||| |  |||||||||||||||||||||||    
T  3267524 tacaccagtcaattgggggtctgaggaatcttcttctgataaatttgaa 3267476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 13787161 - 13787370
Alignment:
Q  16 ctctaatttttatttaaaacatttattttcttgtagttgatagagggactgaagatcctaaatctcagtcattctaagtacttgaaaagaacccccgact 115  Q
    ||||||||||||||| |||||||||| |||||| || || | | |   || || || || |||||||||||||| |  |||||| ||||  |||| ||||    
T  13787161 ctctaatttttattttaaacatttatcttcttgcaggtgctggtgaatctaaaaattctcaatctcagtcattcaatttacttggaaagctccccagact 13787260  T
Q  116 tttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacacccgtccattggagatctcaacaatcttcttctgat 215  Q
    ||||||||||||| || || |||||||| || ||||| ||||||| | || |||  ||| ||||||| ||||||||||||||||| ||| ||| ||||||    
T  13787261 tttcaaaattacccaatcttgaaaagctcatcatgaacgattgtccatgtttgtctgagatacacccttccattggagatctcaataatattcatctgat 13787360  T
Q  216 aaatttgaag 225  Q
    ||||||||||    
T  13787361 aaatttgaag 13787370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 3398942 - 3398799
Alignment:
Q  80 tcagtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtaca 179  Q
    ||||||||  ||||||||||||||  ||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||  ||  |||  ||||||||    
T  3398942 tcagtcataataagtacttgaaaatcaccccagacttttcaaaattaccgaatctagaaaagctcattatgaaggactgtccgagcttgtctgaggtaca 3398843  T
Q  180 cccgtccattggagatctcaacaatcttcttctgataaatttga 223  Q
    || ||||||||| || ||||| | |||  |||||||||||||||    
T  3398842 ccagtccattggggacctcaagagtctcgttctgataaatttga 3398799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 13808425 - 13808557
Alignment:
Q  21 atttttatttaaaacatttattttcttgtagttgatagagggactgaagatcctaaatctcagtcattctaagtacttgaaaagaacccccgacttttca 120  Q
    |||||||||| |||||||||| || ||| |||||||  |    ||||| || || |||||||||||||| ||| |||||| ||| ||||| |||||||||    
T  13808425 atttttattttaaacatttatctttttgcagttgatgaataagctgaaaattctcaatctcagtcattccaagcacttgacaagcaccccagacttttca 13808524  T
Q  121 aaattaccaaacctagaaaagctaattatgaag 153  Q
    ||||||||||| ||||||||||| |||||||||    
T  13808525 aaattaccaaatctagaaaagctcattatgaag 13808557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 3263064 - 3262903
Alignment:
Q  64 ctgaagatcctaaatctcagtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaa 163  Q
    ||||| || |||||||| ||| |||| ||||| || ||||  || || ||||||||||||| ||| || ||||||||||| || |||||| |||||| |     
T  3263064 ctgaaaattctaaatctgagttattccaagtatttaaaaaccactccagacttttcaaaatcaccgaatctagaaaagctcatcatgaagaattgtccat 3262965  T
Q  164 gtctgttggaggtacacccgtccattggagatctcaacaatcttcttctgataaatttgaag 225  Q
    |  |||   ||||||||| ||||||||||||||||||   ||||| | ||||||||||||||    
T  3262964 gcttgtctaaggtacaccagtccattggagatctcaatcgtcttcatatgataaatttgaag 3262903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 3374792 - 3374971
Alignment:
Q  15 tctctaatttttatttaaaacatttattttcttgtagttgatagagggactgaagatcctaaatctcagtcattctaagtacttgaaaagaacccccgac 114  Q
    |||||||||||| |||  ||||||||| ||| || ||||| | || | ||| || || || ||| ||||||||||||  |||||| |||  | ||| ||     
T  3374792 tctctaatttttcttttgaacatttatcttcctgcagttgttggatgaactaaaaattctcaatgtcagtcattctagatacttggaaaacatccctgat 3374891  T
Q  115 ttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacacccgtccattggaga 194  Q
    |||||||||||||| || |||||||| || ||||||||| ||| || | || |||  |||||||||| ||||||||||||    
T  3374892 ttttcaaaattaccgaatctagaaaaacttattatgaagaattatccatgtttgtatgaggtacaccagtccattggaga 3374971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 3325421 - 3325277
Alignment:
Q  82 agtcattctaagtacttgaaaagaacccccgacttt-tcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacac 180  Q
    |||||||||| |||||||||||   ||||||  ||| ||||||||||| || ||||||||||| || |||||| |||||   | | |||| |||||  ||    
T  3325421 agtcattctaggtacttgaaaaacccccccgtttttatcaaaattaccgaatctagaaaagcttataatgaagaattgttccaatttgttcgaggtggac 3325322  T
Q  181 ccgtccattggagatctcaacaatcttcttctgataaatttgaag 225  Q
    | |||||||||||||||||| || |||||| || | |||||||||    
T  3325321 cagtccattggagatctcaagaaccttcttttgttgaatttgaag 3325277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 6906232 - 6906083
Alignment:
Q  76 aatctcagtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggagg 175  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||||||| |||| |||  |||     
T  6906232 aatctcagtcattccaagtacttgaaaagtacccctgacttttcaaaattaccgaatctagaaaagctcattatgaaggattgtccaagtttgtccgaga 6906133  T
Q  176 tacacccgtccattggagatctcaacaatcttcttctgataaatttgaag 225  Q
    |||||||||||||||||| |||||| || |||||||||||||||||||||    
T  6906132 tacacccgtccattggagttctcaagaagcttcttctgataaatttgaag 6906083  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 32411546 - 32411434
Alignment:
Q  14 ttctctaatttttatttaaaacatttattttcttgtagttgatagagggactgaagatcctaaatctcagtcattctaagtacttgaaaagaacccccga 113  Q
    |||| ||| |||||||| ||||| |||| |||||| ||||||| |||   || ||  | || ||||||||||||||||||| ||||||||  | ||||||    
T  32411546 ttctttaacttttattttaaacaattatcttcttgcagttgatggagaagcttaaatttcttaatctcagtcattctaagttcttgaaaaacagccccga 32411447  T
Q  114 cttttcaaaatta 126  Q
    |||||||||||||    
T  32411446 cttttcaaaatta 32411434  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 32411406 - 32411357
Alignment:
Q  176 tacacccgtccattggagatctcaacaatcttcttctgataaatttgaag 225  Q
    |||||| |||||||||| ||||||| | ||||||||||||||||||||||    
T  32411406 tacaccagtccattggaaatctcaatagtcttcttctgataaatttgaag 32411357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 8372082 - 8371940
Alignment:
Q  79 ctcagtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtac 178  Q
    ||||||||||| |||||||||||||| |  || |||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||   | ||||    
T  8372082 ctcagtcattccaagtacttgaaaagcagtcctgacttttcaaaattaccaaatctggaaaagctagttatgaaggattgtcaaagtctgtccaacgtac 8371983  T
Q  179 acccgtccattggagatctcaacaatcttcttctgataaattt 221  Q
    |||||||||||||||||||||| ||||||||||| ||||||||    
T  8371982 acccgtccattggagatctcaagaatcttcttctcataaattt 8371940  T

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Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 14767434 - 14767224
Alignment:
Q  15 tctctaatttttatttaaaacatttattttcttgtagttgatagagggactgaagatcctaaatctcagtcattctaagtacttgaaaagaacccccgac 114  Q
    |||||||||||| ||| ||||| |||| ||| |||||||||| |||   || || || || ||||||||||| || |||||||||| ||| ||||| |||    
T  14767434 tctctaatttttcttttaaacaattatcttcatgtagttgatggagaagctaaaaattctcaatctcagtcactccaagtacttgagaagcacccctgac 14767335  T
Q  115 ttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacacccgtccattggagatctcaacaatcttcttctga 214  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |   | ||||| | |||||||||||||||||| ||| ||||||| |    
T  14767334 ttttcaaaattaccaaatctagaaaagctcattatgaaggattgtcaaagtttatccaacgtacatcagtccattggagatctcaagaatgttcttctca 14767235  T
Q  215 taaatttgaag 225  Q
    |||||||||||    
T  14767234 taaatttgaag 14767224  T

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Target: scaffold0468 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 6572 - 6423
Alignment:
Q  76 aatctcagtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggagg 175  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||||||| |||| |||  ||||    
T  6572 aatctcagtcattccaagtacttgaaaagcacccctgacttttcaaaattaccgaatctagaaaagctcattatgaaggattgtccaagtttgtccgagg 6473  T
Q  176 tacacccgtccattggagatctcaacaatcttcttctgataaatttgaag 225  Q
    ||||||||||||| ||||  ||||| ||| |||||||||| |||||||||    
T  6472 tacacccgtccataggagtgctcaagaatattcttctgattaatttgaag 6423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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