View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13051_low_2 (Length: 707)
Name: NF13051_low_2
Description: NF13051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13051_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 2267663 - 2267319
Alignment:
| Q |
11 |
cagagactagccactagaacaagtgaaataatttggattcagtctcttcttactgaatagaattacagattcgtgtttcggttccaatcaactactatga |
110 |
Q |
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| T |
2267663 |
cagagactagccactggaacaagtgaaataatttggattcagtctcttcttactgaatagaattacagattcgtgtttcagttccaatcaactactatga |
2267564 |
T |
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| Q |
111 |
cagtcaatgcattatctcctggtgtcacaattgtaactcgtataccagcacatgaagagatatcacatatatcacgcctctctgattaggtgacactttg |
210 |
Q |
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| T |
2267563 |
cagtcaatgcattgtctcctggtgtcacaactgtaactcgtataccagcacatgaagagatatcacatatatcaagcctctctgattaggtgacactttg |
2267464 |
T |
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| Q |
211 |
ttcacggatttttctgttttagagtctaaattagtattgatctttaattataaacgatgtcttcaatcatttatgaaatattttcatgtatgagggatga |
310 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
2267463 |
ttcacggattcttctgttttagagtctaaattagtattgatctttaattataaacgatgtcttcaatcatttatgaaatactttcatgtataagggatga |
2267364 |
T |
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| Q |
311 |
attaatgtaannnnnnnnnncaaaagaaagaattgaatactctctt |
356 |
Q |
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| T |
2267363 |
ataaatgtaa-tttttttttcaaaagaaagaattgaatactctctt |
2267319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 409 - 689
Target Start/End: Complemental strand, 2267266 - 2266985
Alignment:
| Q |
409 |
gtagtcctcgccaagggaacagtcgctgccacactaccaaaacacatttctgcaaaaattgaacatgatcaatacgtgaaaaacctaaccgaacctaatc |
508 |
Q |
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| T |
2267266 |
gtagtcctcgcaaagggaacagtcgctgccacactaccaaaacacatttctgcaaaaattgaacatgatcaatacgtgaaaaacctaaccgaacctaatc |
2267167 |
T |
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| Q |
509 |
atgaatcaatagaaaccaaatcgaaattgaaacatagtcaatcatgaaacataaatgaatggaaacttaattcaaactgaaacctaatcgatcttgaatc |
608 |
Q |
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| T |
2267166 |
atgaatcaatagaaaccaaatcgaaattgaaacatagtcaatcatgaaacataaatgaatggaaacctaattcaaactgaaacctaatcgatcttgaatc |
2267067 |
T |
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| Q |
609 |
atgaattaacggaaacataattaaacctaaat-attaaggacatgaatctggcaaaggaaaacacaaatagaaggtgacaat |
689 |
Q |
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|||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2267066 |
atgaattaacggaaacataattaaacctaaatcatgaaggacttgaatctggcaaaggaaaacacaaatagaaggtgacaat |
2266985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 650519 - 650638
Alignment:
| Q |
17 |
ctagccactagaacaagtgaaataatttggattcagtctcttcttactgaatagaattacagattcgtgtttcggttccaatcaactactatgacagtca |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
650519 |
ctagccataagaacaagtgaaataatttggattcagtctcttcttactgaat-----tacaggttcgtgtttcagttccaatcaactactatgacagtca |
650613 |
T |
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| Q |
117 |
atgcattatctcctggtgtcacaat |
141 |
Q |
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||||||| |||||| |||||||||| |
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| T |
650614 |
atgcattgtctcctcgtgtcacaat |
650638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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