View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13051_low_3 (Length: 615)
Name: NF13051_low_3
Description: NF13051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13051_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 10 - 598
Target Start/End: Complemental strand, 36313477 - 36312889
Alignment:
| Q |
10 |
catcatcacttgtattagtccatgttgatgttgatcaacctcaacctctatctattgcaccaattgtatcttcttataatgagaagatacgtccagtgct |
109 |
Q |
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| T |
36313477 |
catcatcacttgtattagtccatgttgatgttgatcaacctcaacctctatctattgcaccaattgtatcttcttataatgagaagatacgtccagtgct |
36313378 |
T |
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| Q |
110 |
tgatgctcttgaaaatctaaggcgtctcaacattgccaaagagggaatccagcttccaaccattgttgttgttggagatcaatcatctggaaagtctagt |
209 |
Q |
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| T |
36313377 |
tgatgctcttgaaaatctaaggcgtctcaacattgccaaagagggaatccagcttccaaccattgttgttgttggagatcaatcatctggaaagtctagt |
36313278 |
T |
|
| Q |
210 |
gtccttgaatcattagctggtatcagcttgccacgtggacaaggaatttgtacaagggtacctttggttatgaggctgcaaaaccatttgcttccacagc |
309 |
Q |
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| T |
36313277 |
gtccttgaatcattagctggtatcagcttgccacgtggacaaggaatttgtacaagggtacctttggttatgaggctgcaaaaccatttgcttccacagc |
36313178 |
T |
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| Q |
310 |
cagagcttgtattggagtataatggcaaacaggttttaactgatgaagcaaatgtctctgatgctataaacacagctactgaagagcttgctggaactgc |
409 |
Q |
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| T |
36313177 |
cagagcttgtattggagtataatggcaaacaggttttaactgatgaagcaaatgtctctgatgctataaacacagctactgaagagcttgctggaactgc |
36313078 |
T |
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| Q |
410 |
caaagggatttcaaacactccactgactttgattgtgaagaagaatggcgttcctgaccttacaatggttgatcttccaggtataactcgtgttcctgtt |
509 |
Q |
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| T |
36313077 |
caaagggatttcaaacactccactgactttgattgtgaagaagaatggcgttcctgaccttacaatggttgatcttccaggtataactcgtgttcctgtt |
36312978 |
T |
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| Q |
510 |
catggtcaacctgataacatttatgatcagattaaggatattatcatggactatataactcctgaagagagcattatcctgaatgttct |
598 |
Q |
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| T |
36312977 |
catggtcaacctgataacatttatgatcagattaaggatattatcatggactatataactcctgaagagagcattatcctgaatgttct |
36312889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 64 - 587
Target Start/End: Complemental strand, 36290940 - 36290417
Alignment:
| Q |
64 |
ttgcaccaattgtatcttcttataatgagaagatacgtccagtgcttgatgctcttgaaaatctaaggcgtctcaacattgccaaagagggaatccagct |
163 |
Q |
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| T |
36290940 |
ttgcaccaattgtttcatcatacaatgaaaaaatacgtccagttctcgatgcccttgagaatctaaggcgtctcaacattgccaaagaaggaattcagct |
36290841 |
T |
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| Q |
164 |
tccaaccattgttgttgttggagatcaatcatctggaaagtctagtgtccttgaatcattagctggtatcagcttgccacgtggacaaggaatttgtaca |
263 |
Q |
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| T |
36290840 |
tccaacaattgttgttgttggagatcaatcttcaggaaagtccagtgtccttgaatctttagctggtatcagcttgccacgtggacaaggaatctgcacg |
36290741 |
T |
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| Q |
264 |
agggtacctttggttatgaggctgcaaaaccatttgcttccacagccagagcttgtattggagtataatggcaaacaggttttaactgatgaagcaaatg |
363 |
Q |
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|| ||||| || ||||| | || || || ||| ||| || | ||||| || | || || | ||||||||| ||||| ||||||||| | ||| |
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| T |
36290740 |
agagtacccttaattatgcgccttcagaatcatccactttcaaaaccagaactcttgttagaattcaatggcaaaacagttttcactgatgaaaaagatg |
36290641 |
T |
|
| Q |
364 |
tctctgatgctataaacacagctactgaagagcttgctggaactgccaaagggatttcaaacactccactgactttgattgtgaagaagaatggcgttcc |
463 |
Q |
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| |||||||| ||||||| ||||||||| || ||||||| |||||||||||||||| |||||||| |||| |||||||| |||||||| || ||||| |
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| T |
36290640 |
tttctgatgcaataaacatagctactgaggaaattgctggttctgccaaagggatttccaacactcctttgacattgattgtcaagaagaacggtgttcc |
36290541 |
T |
|
| Q |
464 |
tgaccttacaatggttgatcttccaggtataactcgtgttcctgttcatggtcaacctgataacatttatgatcagattaaggatattatcatggactat |
563 |
Q |
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||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| ||| |
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| T |
36290540 |
tgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtat |
36290441 |
T |
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| Q |
564 |
ataactcctgaagagagcattatc |
587 |
Q |
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|||||||||||||| || |||||| |
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| T |
36290440 |
ataactcctgaagaaagtattatc |
36290417 |
T |
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Back To:
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