View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13051_low_4 (Length: 511)
Name: NF13051_low_4
Description: NF13051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13051_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 38816651 - 38816155
Alignment:
| Q |
1 |
tagttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatgggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816651 |
tagttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatgggaga |
38816552 |
T |
|
| Q |
101 |
tatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816551 |
tatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaaga |
38816452 |
T |
|
| Q |
201 |
tgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctagat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816451 |
tgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctagat |
38816352 |
T |
|
| Q |
301 |
tttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgactttgtctgttagagaagggtatatagttgtatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816351 |
tttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgactttgtctgttagagaagggtatatagttgtatg |
38816252 |
T |
|
| Q |
401 |
aggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctttcactgagttatgataattgtgcatgtgat |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816251 |
aggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctttcactgagttatgataattgtgcatgtgat |
38816155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 135 - 284
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
| Q |
135 |
tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga |
234 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||| |||| | ||||| |||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
38821928 |
tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga |
38821829 |
T |
|
| Q |
235 |
caaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttt |
284 |
Q |
| |
|
||||||||| || ||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
38821828 |
caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt |
38821782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
| Q |
26 |
tgttggagactgacatctgttggacactggacacacctt |
64 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
35665597 |
tgttggaaactgacatgtgttggacactggacacacctt |
35665559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University