View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13051_low_5 (Length: 457)
Name: NF13051_low_5
Description: NF13051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13051_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 12762615 - 12763039
Alignment:
| Q |
19 |
cacaattgggtgaaaccgaattatggccaggtgaaatgcaatgtcgatgcagttttttcgataacacatttataacaagtccaacttgttgttcgggtga |
118 |
Q |
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| T |
12762615 |
cacaattgggtgaaaccgaattatggccaggtgaaatgcaatgtcgatgcagttttttcgataacgcatttataacaagtccaacttgttgttcgggtga |
12762714 |
T |
|
| Q |
119 |
catcaatggattctttgcgatgacaaaaacaacttggaaatgtgtatgaatgtcaacaatgataggtgaattttgttgctttccttgatgcgtttcaatt |
218 |
Q |
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| T |
12762715 |
catcaatggattctttgcgatgacaaaaacaacttggaaatgtgtatgaatgtcaacaatgataggtgaattt-gttgctttccttgatgcgtttcaatt |
12762813 |
T |
|
| Q |
219 |
catgagcagtttcagacagacgtgtgtaattttttaaaatggttctcaaattcttgtgaagaccatccgacaatgatctactagagtatctgatttagtt |
318 |
Q |
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| T |
12762814 |
catgagcagtttcagacagacgtgtgtaattttttaaaatgtttctcaaattcttgtgaagaccatccgacaatgatctactagagtatctgatttagtt |
12762913 |
T |
|
| Q |
319 |
ctacaatttctagtattttagctaatcctaactttgaagtaaagtcttttaagcaacaaacgaatatgattgtttatattcttgcaaagacggtaatttc |
418 |
Q |
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| T |
12762914 |
cttcaatttctagtattttagctaatcctaactttgaagtaaagtcttttaagcaacaaacaaatatgattgtttatattcttgcaaagacggtaatttc |
12763013 |
T |
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| Q |
419 |
ttagaccaatcaccttgtgtttgtgt |
444 |
Q |
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| T |
12763014 |
ttagaccaatcaccttgtgtttgtgt |
12763039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 12701615 - 12702039
Alignment:
| Q |
19 |
cacaattgggtgaaaccgaattatggccaggtgaaatgcaatgtcgatgcagttttttcgataacacatttataacaagtccaacttgttgttcgggtga |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12701615 |
cacaattgggtgaaaccgaattatggccaggtgaaatgcaatgtcgatgcagttttttcgataacgcatttataacaagtccaacttgttgttcgggtga |
12701714 |
T |
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| Q |
119 |
catcaatggattctttgcgatgacaaaaacaacttggaaatgtgtatgaatgtcaacaatgataggtgaattttgttgctttccttgatgcgtttcaatt |
218 |
Q |
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| T |
12701715 |
catcaatggattctttgcgatgacaaaaacaacttggaaatgtgtatgaatgtcaacaatgataggtgaattt-gttgctttccttgatgcgtttcaatt |
12701813 |
T |
|
| Q |
219 |
catgagcagtttcagacagacgtgtgtaattttttaaaatggttctcaaattcttgtgaagaccatccgacaatgatctactagagtatctgatttagtt |
318 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12701814 |
catgagcagtttcagacagacatgtgtaattttttaaaatgtttatcaaattcttgtgaagaccatccgacaatgatctactagagtatctgatttagtt |
12701913 |
T |
|
| Q |
319 |
ctacaatttctagtattttagctaatcctaactttgaagtaaagtcttttaagcaacaaacgaatatgattgtttatattcttgcaaagacggtaatttc |
418 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12701914 |
cttcaatttctagtattttagctaatcctaactttgaagtaaagtcttttaagcaacaaacaaatatgattgtttatattcttgcaaagacggtaatttc |
12702013 |
T |
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| Q |
419 |
ttagaccaatcaccttgtgtttgtgt |
444 |
Q |
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|||||||||||||||||||||||||| |
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| T |
12702014 |
ttagaccaatcaccttgtgtttgtgt |
12702039 |
T |
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