View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13051_low_7 (Length: 434)

Name: NF13051_low_7
Description: NF13051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13051_low_7
NF13051_low_7
[»] chr6 (2 HSPs)
chr6 (190-265)||(21442283-21442358)
chr6 (15-88)||(21368723-21368796)
[»] chr5 (1 HSPs)
chr5 (247-308)||(42650597-42650659)


Alignment Details
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 21442283 - 21442358
Alignment:
Q  190 aatgatcacacaagggagacctacctcctactttaaaaaacacaaatcgtgtgacgaatgcaaagtgaaattacat 265  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21442283 aatgatcacacaagggaggcctacctcctactttaaaaaacacaaatcgtgtgacaaatgcaaagtgaaattacat 21442358  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 21368796 - 21368723
Alignment:
Q  15 atttcccaagtatctctaatgtttgttcgcgtactttaaaataagtaattccgttagctcttaagaattttgca 88  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||    
T  21368796 atttcccaagtatctctaatgtttgttcgcgtactttcagataagtaattccattagctcttaagaattttgca 21368723  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 42650659 - 42650597
Alignment:
Q  247 atgcaaagtgaaattaca--tttcattcattactacatatacactaaagattcaagcaaaaact 308  Q
    ||||||||||||||||||  ||||||||||||||||| | | | || |||||||||||||||||    
T  42650659 atgcaaagtgaaattacatttttcattcattactacaca-aaattagagattcaagcaaaaact 42650597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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