View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13051_low_9 (Length: 416)
Name: NF13051_low_9
Description: NF13051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13051_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 97 - 400
Target Start/End: Complemental strand, 1859145 - 1858842
Alignment:
| Q |
97 |
tactatgcaagaattaacattttggggcatcgaatattcgaaatcaaccttaacagaccagtattcgaaggaaaacaacgttggcagtaatcgaaggttt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1859145 |
tactatgcaagaattaacattttggggcatcgaatattcgaaatcaaccttaaaagaccagtattcgaaggaaaacaacgttggcagtaatcgaaggttt |
1859046 |
T |
|
| Q |
197 |
ataaatatttaaagttcaaataactaattacacacaaggaacgggcaagagaagttttaaaaaaggacaattatgtttgggaagtcaacgaatttcagaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1859045 |
ataaatatttaaagttcaaataactaattacacataaggaacatgcaagagaagttttaaaaaaggacaattatgtttgggaagtcaacgaatttcagaa |
1858946 |
T |
|
| Q |
297 |
ttcaaaaactacaagaaatatttaaatttgaaagagtggttttttaagttagttaaaagacacatatcattaatgcatcgtaagagctggttccttcttt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
1858945 |
ttcaaaaactacaagaaatatttaaatttgaaagggtggttttttaagttagttaaaagacacacatcattaatgtatcgtaagagttggttccttcttt |
1858846 |
T |
|
| Q |
397 |
tctt |
400 |
Q |
| |
|
|||| |
|
|
| T |
1858845 |
tctt |
1858842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 1865091 - 1865046
Alignment:
| Q |
20 |
atgtgctagttacgtatgaaacaagtgtagttaccagttgcattct |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1865091 |
atgtgctagttacgtatgaaacaagtgtagttactagttgcattct |
1865046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 1869158 - 1869060
Alignment:
| Q |
20 |
atgtgctagttacgtatgaaacaagtgtagt---taccagttgcattcttattttgattaatgtgtagatctatttttattactatgcaagaattaacat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1869158 |
atgtgctagttacgtatgaaacaagtgtagttactactagttgtattct-----------atgtgtagatctatttttattactatgcaagaagtaacat |
1869070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 1859469 - 1859437
Alignment:
| Q |
68 |
ttttgattaatgtgtagatctatttttattact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1859469 |
ttttgattaatgtgtagatctatttttattact |
1859437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University