View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13052_high_10 (Length: 373)
Name: NF13052_high_10
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_high_10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 33382270 - 33382623
Alignment:
| Q |
20 |
attattcttatttgtgtaaggtgtttgaatgttctctatgtgtcgaattggtttgtgttttaactcttgcgattttacaacacatacctgaaattacatt |
119 |
Q |
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| T |
33382270 |
attattcttatttgtgtaaggtgtttgaatgttctctatgtgtcgaattggtttgtgttttaactcttgcgattttacaacacatacctgaaattacatt |
33382369 |
T |
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| Q |
120 |
gcattcattgatgagtgaattttcaaacaagtagtttattttggaaatcattttcaataactggtttatttttttnnnnnnnnnngtgattttcattatg |
219 |
Q |
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| T |
33382370 |
gcattcattgatgggtgaattttcaaacaagtagtttattttggaaatcattttcaataactggtttatttttaaaaaaaaaaaagtgattttcattatg |
33382469 |
T |
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| Q |
220 |
gtaaacaaatacaaagtagttcctacttttttaaagaatctctaaaatttaatctcaagattatgtattgagtatcataatcacttttttataactctaa |
319 |
Q |
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| T |
33382470 |
gtaaacaaatacaaagtagttcctacttttttaaagaatctctaaaatttaatctcaagattatgtattgagtatcataatcacttttttataactctaa |
33382569 |
T |
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| Q |
320 |
caaacagatccttaatctatgttgtttttcaacatgagtgagtttttccctcat |
373 |
Q |
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| T |
33382570 |
caaacagatccttaatctatgttgtttttcaacatgagtgagtttttccctcat |
33382623 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 38565649 - 38565550
Alignment:
| Q |
206 |
tgattttcattatggtaaacaaatacaaagtagttcctacttttttaaagaatctctaaaatttaatctcaagattatgtattgagtatcataatcactt |
305 |
Q |
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| T |
38565649 |
tgattttcattctgctaaacaaacacaaagctgcttctgctttttttaaaaatctctaaaaattaatctctaaat----tattgagtatcaaaatcactt |
38565554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 46663760 - 46663789
Alignment:
| Q |
205 |
gtgattttcattatggtaaacaaatacaaa |
234 |
Q |
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| T |
46663760 |
gtgattttcattatggtaaacaaatacaaa |
46663789 |
T |
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