View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13052_high_14 (Length: 324)

Name: NF13052_high_14
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13052_high_14
NF13052_high_14
[»] chr2 (12 HSPs)
chr2 (18-317)||(30436396-30436695)
chr2 (18-255)||(30468138-30468375)
chr2 (18-246)||(30424145-30424373)
chr2 (18-225)||(30430178-30430385)
chr2 (18-169)||(30475267-30475418)
chr2 (18-172)||(30394102-30394256)
chr2 (18-166)||(30383973-30384121)
chr2 (30-168)||(30482882-30483020)
chr2 (16-165)||(8380056-8380205)
chr2 (18-166)||(23784237-23784385)
chr2 (103-166)||(23767779-23767842)
chr2 (103-166)||(23796948-23797011)
[»] chr5 (1 HSPs)
chr5 (18-166)||(41628322-41628470)
[»] chr8 (1 HSPs)
chr8 (22-94)||(15866710-15866782)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 30436396 - 30436695
Alignment:
Q  18 aatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcaagcagcgtttggaagtagttat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  30436396 aatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttggccagtgatcttatttctcgagcagcgtttggaagtagttat 30436495  T
Q  118 gaagagggaaaaagaatctttcaacttcaaatcgaacaagctgaacttacaacaaaaattatcgagaaagtttatatccctggatggaggtgagactaat 217  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30436496 gaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaacttacaacaaaaattatcgagaaagtttatatccctggatggaggtgagactaat 30436595  T
Q  218 ttttatattgcaagttaaatatgaaaatgattcattttgggtaaactatttagaaataagaaccatcattaagaaacagtgtgttatatattctgtgctg 317  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30436596 ttttaaattgcaagttaaatatgaaaatgattcattttggataaactatttagaaataagaaccatcattaaggaacagtgtgttatatattctgtgctg 30436695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 30468138 - 30468375
Alignment:
Q  18 aatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcaagcagcgtttggaagtagttat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30468138 aatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcgagcagcgtttggaagtagttat 30468237  T
Q  118 gaagagggaaaaagaatctttcaacttcaaatcgaacaagctgaacttacaacaaaaattatcgagaaagtttatatccctggatggaggtgagactaat 217  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||   |||||||||||||||||||||||||| ||| ||      
T  30468238 gaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaacttacaactaaaattatgatgaaagtttatatccctggatggaggtaagattagg 30468337  T
Q  218 ttttatattgcaagttaaatatgaaaatgattcatttt 255  Q
    |||||||||||| ||| |||||||||||| ||| ||||    
T  30468338 ttttatattgcatgttgaatatgaaaatgcttcgtttt 30468375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 30424145 - 30424373
Alignment:
Q  18 aatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcaagcagcgtttggaagtagttat 117  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| || |||||||||||||||    
T  30424145 aatgttggcttcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttggcgagtgatgttatttctcgagctgcatttggaagtagttat 30424244  T
Q  118 gaagagggaaaaagaatctttcaacttcaaatcgaacaagctgaacttacaacaaaaattatcgagaaagtttatatccctggatggaggtgagactaat 217  Q
    ||||||||||||||||| ||||||||||||| |||||||||  |||||||||    | ||||   ||||||||| |||||||||||||||| ||| ||||    
T  30424245 gaagagggaaaaagaatatttcaacttcaaaccgaacaagccaaacttacaatgtcagttatgacgaaagtttacatccctggatggaggtaagattaat 30424344  T
Q  218 ttttatattgcaagttaaatatgaaaatg 246  Q
     |||||||  |||||| |||  |||||||    
T  30424345 atttatatcacaagttgaattcgaaaatg 30424373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 30430178 - 30430385
Alignment:
Q  18 aatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcaagcagcgtttggaagtagttat 117  Q
    ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||| ||| || |||||||||||||||    
T  30430178 aatgttggcttcagatggatcatgtgaaatggaagtatggcctttccttcaaaatttagcaagagatgttatttctcgagctgcatttggaagtagttat 30430277  T
Q  118 gaagagggaaaaagaatctttcaacttcaaatcgaacaagctgaacttacaacaaaaattatcgagaaagtttatatccctggatggaggtgagactaat 217  Q
    ||||||||||||||||| ||||||||||||| |||||||||  |||||||||    ||||||    |||||||| |||||||||||||||| ||| ||||    
T  30430278 gaagagggaaaaagaatatttcaacttcaaaccgaacaagccaaacttacaatgtcaattatgacaaaagtttacatccctggatggaggtaagattaat 30430377  T
Q  218 ttttatat 225  Q
     |||||||    
T  30430378 atttatat 30430385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 30475267 - 30475418
Alignment:
Q  18 aatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcaagcagcgtttggaagtagttat 117  Q
    ||||||||| |||||||||||||||||| |||| || |||||||||||||||||||| || |||||||||||||||  | |||| |||||||||||||||    
T  30475267 aatgttgtcatcagatggatcatgtgaattggatgtttggcctttccttcaaaatttggcgagtgatgttatttctagaacagcatttggaagtagttat 30475366  T
Q  118 gaagagggaaaaagaatctttcaacttcaaatcgaacaagctgaacttacaa 169  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  30475367 gaagagggaaaaagaatatttcaacttcaaatcgagcaagctgaacttacaa 30475418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 30394102 - 30394256
Alignment:
Q  18 aatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcaagcagcgtttggaagtagttat 117  Q
    ||||||||| |||||||||||||||||||| ||||||||||||| ||| || ||||| || ||||||| |||||||| | | ||||||||||||||||||    
T  30394102 aatgttgtcttcagatggatcatgtgaaatagacgtatggccttccctgcagaatttggcaagtgatgctatttctcgaactgcgtttggaagtagttat 30394201  T
Q  118 gaagagggaaaaagaatctttcaacttcaaatcgaacaagctgaacttacaacaa 172  Q
    ||||| ||||||||||| |||||||||||||  || ||||||||||||| |||||    
T  30394202 gaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaacttataacaa 30394256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 30383973 - 30384121
Alignment:
Q  18 aatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcaagcagcgtttggaagtagttat 117  Q
    ||||||||| |||||||||||||||||||| ||  ||||||||| ||| |||||||| || ||||||| |||||||| | | || ||||||||||| |||    
T  30383973 aatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatgctatttctcgaaccgcatttggaagtagctat 30384072  T
Q  118 gaagagggaaaaagaatctttcaacttcaaatcgaacaagctgaactta 166  Q
    ||||| ||||||||||| |||||||||||||  || |||||||||||||    
T  30384073 gaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaactta 30384121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 30482882 - 30483020
Alignment:
Q  30 agatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcaagcagcgtttggaagtagttatgaagagggaaaa 129  Q
    |||||||||||||||||| || |||||||||| | |||||||||| || |||||||||||| ||| | |||| |||||||||||||||||||| |||| |    
T  30482882 agatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaata 30482981  T
Q  130 agaatctttcaacttcaaatcgaacaagctgaacttaca 168  Q
    | ||| |||||||||||||  || |||||||||||||||    
T  30482982 aaaatatttcaacttcaaaaggagcaagctgaacttaca 30483020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 8380205 - 8380056
Alignment:
Q  16 tcaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcaagcagcgtttggaagtagtt 115  Q
    |||| |||||| |||||||||||| ||||||| ||| ||||||||| ||| || |||||  | |||||||||||||||| |   || |||||||||||||    
T  8380205 tcaacgttgtcatcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagtt 8380106  T
Q  116 atgaagagggaaaaagaatctttcaacttcaaatcgaacaagctgaactt 165  Q
    | ||||| ||||||||||| ||| | |||||||  || |||| |||||||    
T  8380105 acgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 8380056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 23784385 - 23784237
Alignment:
Q  18 aatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcaagcagcgtttggaagtagttat 117  Q
    ||||||||| ||| |||||||||||||||||||||||||||||| |||||| |  ||  | |||||||||||  |||   |  | |||||||||||||||    
T  23784385 aatgttgtcttcaaatggatcatgtgaaatggacgtatggccttcccttcagagcttgacaagtgatgttatcgctcgttcgtcatttggaagtagttat 23784286  T
Q  118 gaagagggaaaaagaatctttcaacttcaaatcgaacaagctgaactta 166  Q
    ||||| |||| || | | |||||||||||||| || |||| ||||||||    
T  23784285 gaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaactta 23784237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 23767779 - 23767842
Alignment:
Q  103 tttggaagtagttatgaagagggaaaaagaatctttcaacttcaaatcgaacaagctgaactta 166  Q
    |||||||||||||||||||| |||| || | | |||||||||||||| || |||| ||||||||    
T  23767779 tttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaactta 23767842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 23796948 - 23797011
Alignment:
Q  103 tttggaagtagttatgaagagggaaaaagaatctttcaacttcaaatcgaacaagctgaactta 166  Q
    |||||||||||||||||||| |||| || | | |||||||||||||| || |||| ||||||||    
T  23796948 tttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaactta 23797011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 41628470 - 41628322
Alignment:
Q  18 aatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcaagcagcgtttggaagtagttat 117  Q
    |||||||||  ||||||||||||||||||| ||  ||||||||| |||||| ||||| || |||||||||||||||| | || | || ||||||||||||    
T  41628470 aatgttgtctccagatggatcatgtgaaatagatatatggccttcccttcagaatttggcgagtgatgttatttctcgaacaacattcggaagtagttat 41628371  T
Q  118 gaagagggaaaaagaatctttcaacttcaaatcgaacaagctgaactta 166  Q
    ||||| |||| |||||| |||||||||||||| || |||||||||||||    
T  41628370 gaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 41628322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 15866782 - 15866710
Alignment:
Q  22 ttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctc 94  Q
    ||||| ||||||||| |||||||  | || || |||||||||||||| |||||| || ||||||| |||||||    
T  15866782 ttgtcatcagatggaacatgtgaggttgatgtttggcctttccttcagaattttacctgtgatgtaatttctc 15866710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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