View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13052_high_3 (Length: 529)
Name: NF13052_high_3
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 85 - 510
Target Start/End: Original strand, 19213102 - 19213525
Alignment:
| Q |
85 |
ggcaccgccgctttcttcccagcattcttcttcctaaactctgataggccaaaaagtaaaagtgttaaggtctgccaaagaccgcacagacacaataaat |
184 |
Q |
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| T |
19213102 |
ggcaccgccgctttcttcccagcattcttcttcctaaactctgataggccaaaaagtaaaagtgttaaggtctgccaaagaccgcacagacacaataaat |
19213201 |
T |
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| Q |
185 |
gaattcttccatgtgctaagttacgccagaattagtcagatccaaacaactacacatatctctaatgcgaatgaattcatgaaataaaataagttttcat |
284 |
Q |
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| T |
19213202 |
gaattcttccatgtgctaagttacgccagaattagtcagatccaaacaactacacatatctctaatgcgaatgaattcatgaaataaaataagttttcat |
19213301 |
T |
|
| Q |
285 |
gcaaactattacaaagcagtgtcatctataatccaaaacacacactcccacaatagtctcatttctttttgtagccacgaaccaaatattactcactagc |
384 |
Q |
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| T |
19213302 |
gcaaactattacgaagcagtgtcatctataatccaaaacacacactcccacaatagtctcatttcattttgtagccacgaaccaaatattactcactagc |
19213401 |
T |
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| Q |
385 |
tgactacgcttgtttgtgtagcataacatcatgcaagatcatatcttccaccatgcttaagagttggttcacagtgtacacaacagaccatagaacaaac |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19213402 |
tgactacgcttgtttgtgtagcataacatcatgcaagatcatatcttccaccatgcttaagagttggtt--cagtgtacacaacagaccatagaacaaac |
19213499 |
T |
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| Q |
485 |
tcagttttaggcttttaactaaggca |
510 |
Q |
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| T |
19213500 |
tcagttttaggcttttaactaaggca |
19213525 |
T |
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