View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13052_high_4 (Length: 528)
Name: NF13052_high_4
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 412
Target Start/End: Original strand, 32609352 - 32609752
Alignment:
| Q |
10 |
acatcatcaaaattcataatccattgtatattctttgactaaaagtagaatcaagcaagaacaaaactcagcaagtcacaaaactatatcgatcgattta |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32609352 |
acatcatcaaaattcataatccattgtatattctttgactaaaagtagaatcaagcaagaacaaaactcagcaagtcacaaaactatatcgat--attta |
32609449 |
T |
|
| Q |
110 |
aacagnnnnnnncatagtgaaacaaccaatctcatctccctcaaattccattctatttctaattataaacgaataaaacaagtctcgaatcgtcaaaaca |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32609450 |
aacagaaaaaaacatagtgaaacaaccaatctcatctccctcaaattccattctatttctaattataaacgaataaaacaagtctcgaatcgtcaaaaca |
32609549 |
T |
|
| Q |
210 |
tatatcataatccattctacattccttgactaacagtataatcaatcgagaccaacacataactatatcaattgattccatataatagtctcacataacc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
32609550 |
tatatcataatccattctacattccttgactaacagtataatcaatcgagaccaacacataactatatcaatcgattccatataataatctcacataacc |
32609649 |
T |
|
| Q |
310 |
aaatccataaatatttctaattataaacaaagtttcaaattaccaaaacatcatagaattcagaatccattctacattctttgactaacacagtaaaatc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32609650 |
aaatccataaatatttctaattataaacaaagtttcaaattaccaaaacatcatagaattcagaatccattctacattctttgactaacacaataaaatc |
32609749 |
T |
|
| Q |
410 |
aag |
412 |
Q |
| |
|
||| |
|
|
| T |
32609750 |
aag |
32609752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 32609292 - 32609355
Alignment:
| Q |
149 |
ctcaaattccattctatttctaattataaacgaa--taaaacaagtctcgaatcgtcaaaacat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| ||||||| ||||| |||||||| |
|
|
| T |
32609292 |
ctcaaattccattctatttctaattataaaccaaattaaacaaagtctcaaatcgccaaaacat |
32609355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 32609328 - 32609393
Alignment:
| Q |
333 |
taaacaaagtttcaaattaccaaaacatcat-agaattcagaatccattctacattctttgactaa |
397 |
Q |
| |
|
|||||||||| |||||| |||||||||||| | |||||| |||||||| || ||||||||||||| |
|
|
| T |
32609328 |
taaacaaagtctcaaatcgccaaaacatcatcaaaattcataatccattgtatattctttgactaa |
32609393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University