View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13052_high_7 (Length: 397)
Name: NF13052_high_7
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 29260917 - 29261231
Alignment:
| Q |
16 |
caaacacgatattaaacatttttagattgtcaaaataacttttctattcagaaagttgagttgccataagttttcaccgtaactttaaaaatattccaaa |
115 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29260917 |
caaacatgatgttagacatttttagattgtcaaaataacttttctattcggaaagttgagttgccataagttttcaccgtaattttaaaaatattccaaa |
29261016 |
T |
|
| Q |
116 |
cgcacacagcgatcacgtgcaacaactcaactctataaatagtggcttttaaaatttcacaatttaaaaacgtgaggcagggtcaggtgcgggtcaacca |
215 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29261017 |
cgcacatagcgaacacgtgcaacaactcaactctacaaatagtggcttttaaaatttcacaatttgaaaacgtgaggcagggtcaggtgcgggtcaacca |
29261116 |
T |
|
| Q |
216 |
aacacatactaagtcataattagtctaattgaaagactaatctacctaaagtcaaactactaaattatagttagtctaatttgaaatggcaaaactaaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29261117 |
aacacatactaagtcataattagtctaattgaaagactaatc-acctaaagtcaaactactaaattatagttagtctaa-ttgaaatggcaaaactaaaa |
29261214 |
T |
|
| Q |
316 |
ctataaatacgacgtat |
332 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29261215 |
ctataaatacgacgtat |
29261231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 29261256 - 29261307
Alignment:
| Q |
332 |
tttcttttgctacaagatatgtg--ggtcaccttccaactacatggtgtcag |
381 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29261256 |
tttcttttgctacaagatatgtgtgggtcaccttccaactacatggtgtcag |
29261307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University