View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13052_low_1 (Length: 713)
Name: NF13052_low_1
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 647; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 17411763 - 17411077
Alignment:
| Q |
1 |
ttcaaacttgagttcttttttgattcaaatccgtatttttcaaacacgatcctgaccaaaacttatcatatggtcgatgaagacgagtttataatggaga |
100 |
Q |
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| T |
17411763 |
ttcaaacttgagttcttttttgattcaaatccgtatttttcaaacacgatcctgaccaaaacttatcatatggtcgatgaagacgagtttataatggaga |
17411664 |
T |
|
| Q |
101 |
aggctattgggtaagttggttcttttaacctgatgctattatgcgattagcgatctattttgca-ttgtttaggatcacgagtaaggtttgcttgctgca |
199 |
Q |
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| T |
17411663 |
aggctattgggtaagttggttcttttaacctgatgctattatgcgattagcgatctattttgcaattgtttaggatcacgagtaaggtttgcttgctgca |
17411564 |
T |
|
| Q |
200 |
ttttt-aacaggaccaaaattgaatggcttccgggcaaatctttgaccgagaagaaagatccaaacactgcaaaacaaactatcgaaactgaaaaatgtg |
298 |
Q |
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| T |
17411563 |
ttttttaacaggaccgaaattgaatggcttccgggcaaatcattgaccgagaagaaagatccaaacactgcaaaacaaactatcgaaactgaaaaatttg |
17411464 |
T |
|
| Q |
299 |
atagtttcttcaattttttcaactcgctagagattcccaaagacggaatgggtgttgatgaagaagcggtatgaaagactatctataaaaactcgttgat |
398 |
Q |
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| T |
17411463 |
atagtttcttcaattttttcaactcgctagagattcccaaagatggcatgggtgttgatgaagaagcggtatgaaagactatctataaaaactcgttgat |
17411364 |
T |
|
| Q |
399 |
atagataaatatgaaatactatttttcttgaacaaatttattttattttttaaacaggatgaagaacttcagaatgagatggaacatgactatgacattg |
498 |
Q |
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| T |
17411363 |
atagataaatatgaaatactatttttcttgaataaatttattttattttttaaacaggatgaagaacttcagaatgagatggaacatgactatgacattg |
17411264 |
T |
|
| Q |
499 |
ggtaagctaaatactatgatgttttaacataattgttgactcatgatacccttttggtttttgcaactttgattatgtactttaatgaatattgatgctt |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17411263 |
ggtaagctaaatactatgatgttttaacataattgttgactcatgatacccttttggtttttgcaactttgattatgtactttaatgaatattgatgctt |
17411164 |
T |
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| Q |
599 |
gtttaggtccaccataagagacaaaatcattcccaatgctgtatcatggtataccggggaggcttccgatggagagtctggagattt |
685 |
Q |
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| T |
17411163 |
gtttaggtccaccataagagacaaaatcattcccaatgctgtatcatggtataccggggaggcttccgatggagagtctggagattt |
17411077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 439 - 662
Target Start/End: Complemental strand, 17405869 - 17405643
Alignment:
| Q |
439 |
ttttattttttaaacaggatgaagaacttcagaatgagatggaacatgactatgacattgggtaagctaaatactatgatgttttaacataat---tgtt |
535 |
Q |
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||||||||||||||||| | | ||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |||| |
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| T |
17405869 |
ttttattttttaaacagtgttatgaacttcaggatgttatggaacgggactatgacattgggtaagctaaataatatggtgttttaacataataattgtt |
17405770 |
T |
|
| Q |
536 |
gactcatgatacccttttggtttttgcaactttgattatgtactttaatgaatattgatgcttgtttaggtccaccataagagacaaaatcattcccaat |
635 |
Q |
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|| ||||||| | |||||| | ||| || ||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||| ||||| ||| || |
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| T |
17405769 |
gattcatgatgctcttttgctatttataattttgattatgtacttaaatgaactttgatgcttgtttaggtcaaccataagggacaagatcatcccccat |
17405670 |
T |
|
| Q |
636 |
gctgtatcatggtataccggggaggct |
662 |
Q |
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| T |
17405669 |
gctgttgtatggtttactggggaggct |
17405643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 17406378 - 17406245
Alignment:
| Q |
1 |
ttcaaacttgagttcttttttgattcaaatccgtatttttcaaacacgatcctgaccaaaacttatcatatggtcgatgaagacgagtttataatggaga |
100 |
Q |
| |
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|||||||| ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||| | ||||| |||||| | || |||||| |
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| T |
17406378 |
ttcaaactcgagttcttttttgatcccaatccgtatttttcaaacacggtcctgaccaaaacttatcacatgcttgatgaggacgagcctttactggaga |
17406279 |
T |
|
| Q |
101 |
aggctattgggtaagttggttcttttaacctgat |
134 |
Q |
| |
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|||| |||||||||||||| |||||| ||||| |
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| T |
17406278 |
gggcttttgggtaagttggtctttttaatctgat |
17406245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 17391243 - 17391109
Alignment:
| Q |
1 |
ttcaaacttgagttcttttttgattcaaatccgtatttttcaaacacgatcctgaccaaaacttatcatatggtcgatgaagacgagtttataatggaga |
100 |
Q |
| |
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||||| ||||||||||| |||||| | ||||| |||||||||||| ||||| |||| || || ||||||||||| ||||| || || |||| |||||| |
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| T |
17391243 |
ttcaagcttgagttcttctttgataccaatccatatttttcaaactcgatcttgacgaagacatatcatatggttgatgaggatgaacctatattggaga |
17391144 |
T |
|
| Q |
101 |
aggctattgggtaagttggttcttttaacctgatg |
135 |
Q |
| |
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| || |||||||||| |||| |||| |||||||| |
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| T |
17391143 |
aagcaattgggtaagctggtcatttttacctgatg |
17391109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 435 - 506
Target Start/End: Complemental strand, 17390793 - 17390723
Alignment:
| Q |
435 |
tttattttattttttaaacaggatgaagaacttcagaatgagatggaacatgactatgacattgggtaagct |
506 |
Q |
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|||| |||||||||||| |||| ||| |||||||||||| |||||||||| ||||| ||||||||||||||| |
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| T |
17390793 |
tttaatttattttttaa-caggctgaggaacttcagaatcagatggaacaggactacgacattgggtaagct |
17390723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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