View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13052_low_12 (Length: 359)
Name: NF13052_low_12
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 341
Target Start/End: Complemental strand, 10218998 - 10218678
Alignment:
| Q |
22 |
atttaaaggcaacgatacaatgataactggtaataagttttgtaacaagaacaattggcacaaacggtctattgatatttcaataaaaagaataaaagtg |
121 |
Q |
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| T |
10218998 |
atttaaaggcaacgatacaatgataactgataataagttttgtaacaagaacaattggcacaaacgatctattgatatttcaataaaaagaataaaagtg |
10218899 |
T |
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| Q |
122 |
gccggctannnnnnnnnnatatggacaataaataccgaaattattaagtcagacgctatgatgaacatttgaacttcgactatttcatttg-gtatgtga |
220 |
Q |
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| T |
10218898 |
gccggctattttttt---atatgaacaataaatgtcgaaattgttaagtcagacattatggtgagcattcgaacttcgactatttcatttgtgtatgtga |
10218802 |
T |
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| Q |
221 |
gtttttaacagtgttgtcgt---ttcttttatttaccaaacnnnnnnntcatcaacaaaaagtccatataatcacattaaattgtgaatttgtgattcac |
317 |
Q |
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| T |
10218801 |
gtttttaatagcgttgtcgtcgtttcttttatttaccaaacaaaaaaatcatcaacaaaaagtccatataatcacattaaattgtgaatttgtgattcac |
10218702 |
T |
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| Q |
318 |
tttggctccaatgctagctcttac |
341 |
Q |
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| T |
10218701 |
tttggctccaatgctagctcttac |
10218678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 11050971 - 11050852
Alignment:
| Q |
11 |
catcatcatgaatttaaaggcaa-cgatacaatgataactggtaataagttttgtaacaagaacaattggcacaaacggtctattgatatttcaataaaa |
109 |
Q |
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| T |
11050971 |
catcatcatgaattaaaagacaaaccatacaatggtaactggtaataagttttgtaacaagaacaattggcacaaagagtctattgatgtttcaataaaa |
11050872 |
T |
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| Q |
110 |
agaataaaagtggccggcta |
129 |
Q |
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| T |
11050871 |
agaataaaagtggccggcta |
11050852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 11050729 - 11050630
Alignment:
| Q |
189 |
tttgaacttcgactatttcatttg-gtatgtgagtttttaacagtgttgtcgtttcttttatttaccaaacnnnnnnntcatcaacaaaaagtccatata |
287 |
Q |
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| T |
11050729 |
tttgaattccgactatttcatttgtgtatgtgagtttttaacaactttgt-gtttcttttatctaccaaataaaaatatcatcaataaaaagtccatata |
11050631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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