View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13052_low_13 (Length: 357)
Name: NF13052_low_13
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 48872438 - 48872103
Alignment:
| Q |
14 |
atcactcttcacttgatattatattttttgctgctataaatgattaattttatcctatagtgaagacttttgatctttgttcattatgcaaatcataagt |
113 |
Q |
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|||||||||||| || ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
48872438 |
atcactcttcacctggtattacattttttgctgctataaatgattacttttatcccatagtgaagacttttgatctttgttcataatgaaaatcataagt |
48872339 |
T |
|
| Q |
114 |
tgtaattgtaatagcattttttaggttcaaatatgtttctctggtagtagtgttatgactgtgttctgtttagttaagttcatgctgtagcagttcagtt |
213 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48872338 |
tgtaattgtaatagcattttttaggttcaaatctgtttctctgatagtagtgttatgactgtgttctgtttagttcagttcatgctgtagcagttcagtt |
48872239 |
T |
|
| Q |
214 |
tgaaaatgtgaaagctgatgcagttttcataaaccactgttagtcttcctcactttgcaagtcagttttataaatcgtgtatgcaaaactattaccttct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |||| |
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| T |
48872238 |
tgaaaatgtgaaagctgatgcagttttcataaaccactgttagtcttcttcactttgcaagtcagttttataaatgatgtatgcaaaactaatacattct |
48872139 |
T |
|
| Q |
314 |
ctactagtttttaccgactgcttcctctagaattat |
349 |
Q |
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|| |||||||||| |||||||||||||||||||||| |
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| T |
48872138 |
ctcctagtttttaacgactgcttcctctagaattat |
48872103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 48877742 - 48877407
Alignment:
| Q |
14 |
atcactcttcacttgatattatattttttgctgctataaatgattaattttatcctatagtgaagacttttgatctttgttcattatgcaaatcataagt |
113 |
Q |
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|||||||||||| || ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
48877742 |
atcactcttcacctggtattacattttttgctgctataaatgattacttttatcccatagtgaagacttttgatctttgttcataatgaaaatcataagt |
48877643 |
T |
|
| Q |
114 |
tgtaattgtaatagcattttttaggttcaaatatgtttctctggtagtagtgttatgactgtgttctgtttagttaagttcatgctgtagcagttcagtt |
213 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48877642 |
tgtaattgtaatagcattttttaggttcaaatctgtttctctgatagtagtgttatgactgtgttctgtttagttcagttcatgctgtagcagttcagtt |
48877543 |
T |
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| Q |
214 |
tgaaaatgtgaaagctgatgcagttttcataaaccactgttagtcttcctcactttgcaagtcagttttataaatcgtgtatgcaaaactattaccttct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |||| |
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| T |
48877542 |
tgaaaatgtgaaagctgatgcagttttcataaaccactgttagtcttcttcactttgcaagtcagttttataaatgatgtatgcaaaactaatacattct |
48877443 |
T |
|
| Q |
314 |
ctactagtttttaccgactgcttcctctagaattat |
349 |
Q |
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|| |||||||||| |||||||||||||||||||||| |
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| T |
48877442 |
ctcctagtttttaacgactgcttcctctagaattat |
48877407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 232 - 349
Target Start/End: Complemental strand, 48887930 - 48887813
Alignment:
| Q |
232 |
tgcagttttcataaaccactgttagtcttcctcactttgcaagtcagttttataaatcgtgtatgcaaaactattaccttctctactagtttttaccgac |
331 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| |
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| T |
48887930 |
tgcagttttcataaaccactgttagtcttcttcactttgcaagtcagttttataaatcatgtatgcaaaactaatacattctctactagtttttaccgac |
48887831 |
T |
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| Q |
332 |
tgcttcctctagaattat |
349 |
Q |
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|||||||||||||||||| |
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| T |
48887830 |
tgcttcctctagaattat |
48887813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 48887976 - 48887930
Alignment:
| Q |
141 |
caaatatgtttctctggtagtagtgttatgactgtgttctgtttagt |
187 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
48887976 |
caaatctgtttctctgatagtagtgttatgactgtgttctgtttagt |
48887930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 7491249 - 7491173
Alignment:
| Q |
180 |
tgtttagttaagttcatgctgtagcagttcagtttgaaaatgtgaaagctgatgcagttttcataaaccactgttag |
256 |
Q |
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|||| |||| ||||||||||||||||||| || ||| |||||||||||||| ||||| |||||||| ||||| |||| |
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| T |
7491249 |
tgttcagtttagttcatgctgtagcagtttagattgtaaatgtgaaagctggtgcagatttcataatccactattag |
7491173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 7490984 - 7490955
Alignment:
| Q |
36 |
attttttgctgctataaatgattaatttta |
65 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7490984 |
attttttgctgctataaatgattaatttta |
7490955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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