View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13052_low_14 (Length: 351)
Name: NF13052_low_14
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_low_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 148 - 351
Target Start/End: Complemental strand, 34790375 - 34790172
Alignment:
| Q |
148 |
gaacttctccatacttatgctatgctcatccaaagaattcatcatttttgcatagaaacatttattttcagcatactcttagataagaaaattaatgtgt |
247 |
Q |
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| T |
34790375 |
gaacttctccatacttatgctatgctcatccaaagaattcatcatttttgcatagaaacatttattttcagcatactcttagataaggaaattaatgtgt |
34790276 |
T |
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| Q |
248 |
caattaacttgtaaagaccgaagcttcctcccatgataccttaaaattttggaatagttttcctatgcaactcagtctcgtgttgatggttgacagggct |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| |
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| T |
34790275 |
caattaacttgtaaagaccgaagcttcctcccatgataccttaaaattttggaatagttttcctatgcaactcagtctcgcgttgatggttgatatggct |
34790176 |
T |
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| Q |
348 |
ggat |
351 |
Q |
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|||| |
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| T |
34790175 |
ggat |
34790172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 5572869 - 5572994
Alignment:
| Q |
17 |
attttgagtggccatataccagtaaattcaaagataactcttgaattagaacttctgcatactg-ttaaggctataagtgtgacttgttgggtagaattg |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | | |||||||| |||||||||||||||||||||| |
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| T |
5572869 |
attttgagtggtcatataccagtaaattcaaagataactcttgaattagagcttctgcatactgctcagggctataaatgtgacttgttgggtagaattg |
5572968 |
T |
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| Q |
116 |
gggaagaaagtaattgtttatataat |
141 |
Q |
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| T |
5572969 |
gggaagaaagtaattgtttatgtaat |
5572994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 5575915 - 5576025
Alignment:
| Q |
32 |
ataccagtaaattcaaagataactcttgaattagaacttctgcatactgttaagg-ctataagtgtgacttgttgggtagaattggggaagaaagtaatt |
130 |
Q |
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| T |
5575915 |
ataccaataaatttaaagataactcttgaattagagcttctgcatattgctcagggctataaatttgacttgttgggtagaattgaggacgaaagtaatt |
5576014 |
T |
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| Q |
131 |
gtttatataat |
141 |
Q |
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|||||| |||| |
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| T |
5576015 |
gtttatgtaat |
5576025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 5586395 - 5586505
Alignment:
| Q |
32 |
ataccagtaaattcaaagataactcttgaattagaacttctgcatactg-ttaaggctataagtgtgacttgttgggtagaattggggaagaaagtaatt |
130 |
Q |
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||||| ||||||||||||||||||||| ||||||| ||||||| ||||| | | |||||||| |||| |||||||| || |||||||||||||||||||| |
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| T |
5586395 |
atacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtgtcttgttggatataattggggaagaaagtaatt |
5586494 |
T |
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| Q |
131 |
gtttatataat |
141 |
Q |
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||||| |||| |
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| T |
5586495 |
atttatgtaat |
5586505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 5592621 - 5592731
Alignment:
| Q |
32 |
ataccagtaaattcaaagataactcttgaattagaacttctgcatactg-ttaaggctataagtgtgacttgttgggtagaattggggaagaaagtaatt |
130 |
Q |
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||||| ||||||||||||||||||||| ||||||| |||||||||||| | | |||||||| || |||| | | || |||||||||||||||||||| |
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| T |
5592621 |
atacctgtaaattcaaagataactcttcaattagattttctgcatactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaatt |
5592720 |
T |
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| Q |
131 |
gtttatataat |
141 |
Q |
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||||| |||| |
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| T |
5592721 |
atttatgtaat |
5592731 |
T |
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