View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13052_low_18 (Length: 299)
Name: NF13052_low_18
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_low_18 |
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| [»] scaffold0536 (1 HSPs) |
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| [»] scaffold0526 (1 HSPs) |
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| [»] scaffold1281 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 48888905 - 48889183
Alignment:
| Q |
16 |
taaggctaacatatgtcatatcaggtgcttacttgctgcataattatgtnnnnnnnggtagttgaaaaagtttgctatcaatttagagacacgtaggctc |
115 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48888905 |
taaggctaacatatgtcatttcaggtgcttacttgctgcataattatgtaaaaaaaggtagttgaaaaagtttgctatcaatttagagacacgtaggctc |
48889004 |
T |
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| Q |
116 |
agatttgatttgtacttttatatgcttaaatttggtaaagaggattaggaagcctaagtgatgattttagacaaatctaagatgagatttcctttcttac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48889005 |
agatttgatttgtacttttatatgcttaaatttggtaaagaggattaggaagcctaagtgatgattttagacaaatctaagatgagatttcctttcttac |
48889104 |
T |
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| Q |
216 |
caaatctttctatctttaaatctctaataaggttaagacaaaacttgagagctataaccaacttggaggtgtactcttt |
294 |
Q |
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| T |
48889105 |
caaatctttctatctttaaatctctaataaggttaagacaaaacttgagagctataaccaacttggaggtgtactcttt |
48889183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 15349961 - 15350089
Alignment:
| Q |
164 |
gaagcctaagtgatgattttagacaaatctaagatgagatttcctttcttaccaaatctttctatctttaaatctctaataaggttaagacaaaacttga |
263 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| | || | |||||||||||||||| | || ||||||||||||| |
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| T |
15349961 |
gaagcctaagtggtgattttagacaaatctaagatgagatttcttttcttaccaaatttctcaagctttaaatctctaatacgatttagacaaaacttga |
15350060 |
T |
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| Q |
264 |
gagctataaccaacttggaggtgtactct |
292 |
Q |
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| T |
15350061 |
gagctataaccaacttggaggtgtactct |
15350089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 285
Target Start/End: Original strand, 9122253 - 9122405
Alignment:
| Q |
147 |
ttggtaaagaggattaggaagcctaagtgatgatttt------agacaaatctaagatgagatttcctttcttac--------caaatctttctatcttt |
232 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||| ||||| | | | |||| |
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| T |
9122253 |
ttggtaaagaagattaggaagcctaagtgatgatttagagttcagacaaaactaagataagatttcctttcttacaatcctaccaaatttcgcaagcttt |
9122352 |
T |
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| Q |
233 |
aaatctctaataaggttaagacaaaacttgagagctataaccaacttggaggt |
285 |
Q |
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|||||||||||| |||| |||| |||| |||| ||||||||||||||| |||| |
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| T |
9122353 |
aaatctctaatatggtttagactaaacatgagggctataaccaacttgaaggt |
9122405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 277
Target Start/End: Complemental strand, 8524 - 8398
Alignment:
| Q |
150 |
gtaaagaggattaggaagcctaagtgatgattttagacaaatctaagatgagatttcctttcttaccaaatctttctatctttaaatctctaataaggtt |
249 |
Q |
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||||||||||||| || |||||||| |||| |||||||||| |||||| ||| ||||||||| ||| |||| | | |||| |||||||||| |||| |
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| T |
8524 |
gtaaagaggattatgacgcctaagtaatga-tttagacaaaactaagacgaggtttcctttcatactaaatttcacatgctttgaatctctaatctggtt |
8426 |
T |
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| Q |
250 |
aagacaaaacttgagagctataaccaac |
277 |
Q |
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| T |
8425 |
tagacaaaacttgagggctataaacaac |
8398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 46512903 - 46512819
Alignment:
| Q |
86 |
tttgctatcaatttagagacacgtaggctcagatttgatttgtacttttatatgcttaaatttggtaaagaggattaggaagcctaa |
172 |
Q |
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|||| ||||| |||||||||| |||||| | |||||||||||| ||||| || |||||||||||||||||||||||||||||| |
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| T |
46512903 |
tttgttatcagtttagagacatttaggctgaaatttgatttgtatttttaa--gcacaaatttggtaaagaggattaggaagcctaa |
46512819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0526 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0526
Description:
Target: scaffold0526; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 11214 - 11347
Alignment:
| Q |
74 |
tagttgaaaaagtttgctatcaatttagagacacgtaggctcagatttgatttgtacttttatatgcttaaatttggtaaagaggattaggaagcctaag |
173 |
Q |
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|||||||| | ||||| |||||||||||||||| ||| |||| |||||||||||| |||| | | || ||||||||| |||| |||||||||| |
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| T |
11214 |
tagttgaacatgtttgttatcaatttagagacatgtattctcaaatttgatttgtaaatttaa--gatcaagcatggtaaagaatattaagaagcctaag |
11311 |
T |
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| Q |
174 |
tgatgattttagacaaatctaagatgagatttccttt |
210 |
Q |
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|||||| ||||||||| ||||||||| ||||||||| |
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| T |
11312 |
tgatga-cttagacaaaactaagatgatatttccttt |
11347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1281 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1281
Description:
Target: scaffold1281; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 1032 - 971
Alignment:
| Q |
148 |
tggtaaagaggattaggaagcctaagtgatgattttagacaaatctaagatgagatttccttt |
210 |
Q |
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||||||||| |||| |||||||||||||||| ||||||||| ||||||||| ||||||||| |
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| T |
1032 |
tggtaaagaatattaagaagcctaagtgatga-cttagacaaaactaagatgatatttccttt |
971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 11971374 - 11971435
Alignment:
| Q |
148 |
tggtaaagaggattaggaagcctaagtgatgattttagacaaatctaagatgagatttccttt |
210 |
Q |
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||||||||| |||| |||||||||||||||| ||||||||| ||||||||| ||||||||| |
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| T |
11971374 |
tggtaaagaatattaagaagcctaagtgatga-cttagacaaaactaagatgatatttccttt |
11971435 |
T |
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