View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13052_low_2 (Length: 631)

Name: NF13052_low_2
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13052_low_2
NF13052_low_2
[»] chr3 (2 HSPs)
chr3 (1-380)||(36745244-36745623)
chr3 (503-609)||(36745622-36745728)
[»] chr8 (21 HSPs)
chr8 (137-242)||(6274156-6274261)
chr8 (137-242)||(6288406-6288511)
chr8 (116-382)||(6450315-6450581)
chr8 (137-242)||(6331535-6331640)
chr8 (137-242)||(6351894-6351999)
chr8 (137-382)||(6456577-6456822)
chr8 (137-236)||(6390630-6390729)
chr8 (497-607)||(6273681-6273791)
chr8 (137-227)||(7458732-7458822)
chr8 (137-242)||(6321028-6321133)
chr8 (536-609)||(6449917-6449990)
chr8 (533-609)||(6456384-6456460)
chr8 (137-236)||(6409835-6409934)
chr8 (137-239)||(6362830-6362932)
chr8 (502-595)||(6287944-6288037)
chr8 (324-382)||(6262699-6262757)
chr8 (493-603)||(6320564-6320674)
chr8 (497-603)||(6331026-6331132)
chr8 (137-227)||(7471134-7471224)
chr8 (325-382)||(6409689-6409746)
chr8 (571-607)||(6390109-6390145)
[»] chr1 (2 HSPs)
chr1 (139-242)||(36925655-36925758)
chr1 (552-600)||(47127110-47127158)
[»] chr5 (3 HSPs)
chr5 (116-382)||(9605567-9605833)
chr5 (560-607)||(9606050-9606097)
chr5 (46-118)||(9605326-9605398)
[»] chr2 (2 HSPs)
chr2 (304-382)||(42689192-42689270)
chr2 (537-595)||(42689380-42689438)


Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 36745244 - 36745623
Alignment:
Q  1 gtgagtaaagtgctgttgcctccagaaggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttgtaaatgacgcctgctttcacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745244 gtgagtaaagtgctgttgcctccagaaggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttgtaaatgacgcctgctttcacc 36745343  T
Q  101 aactcatgagtcactggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttct 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36745344 aactcatgagtcactggttgaatacacattgcgtgattgagccattcatcatagctacaaataggtgtctcagtgtggttcatcctattcataagcttct 36745443  T
Q  201 acagcctcactatcgtgacacaatgaatatcaatgcacttgctcggagttcattgatcagtggaggtggcattatagagcaagcatttttgccaggaccg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745444 acagcctcactatcgtgacacaatgaatatcaatgcacttgctcggagttcattgatcagtggaggtggcattatagagcaagcatttttgccaggaccg 36745543  T
Q  301 tacgctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagag 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745544 tacgctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagag 36745623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 503 - 609
Target Start/End: Original strand, 36745622 - 36745728
Alignment:
Q  503 agaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgcta 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745622 agaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgcta 36745721  T
Q  603 ttaaggc 609  Q
    |||||||    
T  36745722 ttaaggc 36745728  T

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Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 6274261 - 6274156
Alignment:
Q  137 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 236  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||||||||||||||||||| |||  || |||||||||||||||||||| || |||||    
T  6274261 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcatcctattcataagcttttacttccgcactatcgtgacacaatgaacattaatgc 6274162  T
Q  237 acttgc 242  Q
    ||||||    
T  6274161 acttgc 6274156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 6288511 - 6288406
Alignment:
Q  137 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 236  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||||||||||||||||||| |||  || |||||||||||||||||||| || |||||    
T  6288511 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcatcctattcataagcttttacttccgcactatcgtgacacaatgaacattaatgc 6288412  T
Q  237 acttgc 242  Q
    ||||||    
T  6288411 acttgc 6288406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 116 - 382
Target Start/End: Complemental strand, 6450581 - 6450315
Alignment:
Q  116 ggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcg 215  Q
    |||||||||| |||   ||||| || |||||||||||||| |||||||||  ||| |||||  |||| || ||| |||||||| ||   || || || ||    
T  6450581 ggttgaatactcatgcagtgatggaaccattcatcatagcaacaaatagacatctaagtgtacttcacccgattaataagcttttattcccccattaccg 6450482  T
Q  216 tgacacaatgaatatcaatgcacttgctcggagttcattgatcagtggaggtggcattatagagcaagcatttttgccaggaccgtacgctgttgagatg 315  Q
    ||||||||| |||||||||| |||||||||     |  | |||| ||  || ||||||||||||||| ||||||  ||||||||  |  |  |||||||     
T  6450481 tgacacaataaatatcaatggacttgctcgacaagctctaatcaatgctggcggcattatagagcaaacattttgtccaggaccaaattccattgagatt 6450382  T
Q  316 tcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 382  Q
    || ||||||||||||||| ||||||||||  |||| |||||| |||| |||||||||||||||||||    
T  6450381 tcttctgcagtttacaagaattgggttttcactgatcaagcattaccagctgatcttatcaagaggt 6450315  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 6331640 - 6331535
Alignment:
Q  137 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 236  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| |||||||| || |||||||  || || ||||||||||||||||| || |||||    
T  6331640 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcacaaacttctacttccacattatcgtgacacaatgaacattaatgc 6331541  T
Q  237 acttgc 242  Q
    ||||||    
T  6331540 acttgc 6331535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 6351999 - 6351894
Alignment:
Q  137 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 236  Q
    ||||||||||||||||||| ||||| ||   ||| ||||||||||| ||||||||||| ||| |||  |||||||| |||||||||||||| || |||||    
T  6351999 ttgagccattcatcatagcaacaaacaggcatcttagtgtggttcaccctattcataaacttttacttcctcactaccgtgacacaatgaacataaatgc 6351900  T
Q  237 acttgc 242  Q
    ||||||    
T  6351899 acttgc 6351894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 137 - 382
Target Start/End: Complemental strand, 6456822 - 6456577
Alignment:
Q  137 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 236  Q
    |||| |||||||||||||| ||||||||   ||| |||||  |||| || ||| |||| ||| ||   ||||| |  ||||||||||| ||||||||||     
T  6456822 ttgaaccattcatcatagcaacaaataggcatctaagtgttcttcacccaattaataaacttttatttcctcatttccgtgacacaataaatatcaatgg 6456723  T
Q  237 acttgctcggagttcattgatcagtggaggtggcattatagagcaagcatttttgccaggaccgtacgctgttgagatgtcgtctgcagtttacaaggat 336  Q
    |||||||||    ||  | |||| ||  |||||||||||||||||| ||||||||||||||||  |  | || ||||| || ||   |||||||| ||||    
T  6456722 acttgctcgacaatctctaatcaatgctggtggcattatagagcaaacatttttgccaggaccaaattcagtcgagatttcttcaatagtttacagggat 6456623  T
Q  337 tgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 382  Q
    ||||||||  | ||||||||| |||| |||||||||||||||||||    
T  6456622 tgggttttcaccgaccaagcattaccggctgatcttatcaagaggt 6456577  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 6390729 - 6390630
Alignment:
Q  137 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 236  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||| |||  || ||||||||| |||||||||| || |||||    
T  6390729 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaacttttacttccacactatcgtaacacaatgaacataaatgc 6390630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 497 - 607
Target Start/End: Complemental strand, 6273791 - 6273681
Alignment:
Q  497 ttatttagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatggg 596  Q
    |||| ||||||| |||||||| ||||| | ||| | || ||||| ||||||||  ||||| | |||||||||| ||||| ||||||||||||||||||||    
T  6273791 ttatctagaggagtggctgttaaggatccaagttccccacacggccttcgccttctgatagaggactacccttatgctgctgatggattagagatatggg 6273692  T
Q  597 atgctattaag 607  Q
     || |||||||    
T  6273691 ctgttattaag 6273681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 7458822 - 7458732
Alignment:
Q  137 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaa 227  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||| |||  || ||||| ||||||||||||||    
T  7458822 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaacttttacttccacactaccgtgacacaatgaa 7458732  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 6321133 - 6321028
Alignment:
Q  137 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 236  Q
    ||||||||||||||||||| || |||||   ||| ||||||||||| |||||||| || ||||| |  || || ||||||||||||||||| || |||||    
T  6321133 ttgagccattcatcatagcaactaataggcatcttagtgtggttcaccctattcacaaacttctgcttccacattatcgtgacacaatgaacattaatgc 6321034  T
Q  237 acttgc 242  Q
    ||||||    
T  6321033 acttgc 6321028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 536 - 609
Target Start/End: Complemental strand, 6449990 - 6449917
Alignment:
Q  536 cacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgctattaaggc 609  Q
    ||||| ||||| || |||||| | |||||||||| ||||||||||||| |||| ||||||||||||||||||||    
T  6449990 cacggccttcgacttgtgatagaggactacccttatgctgttgatggactagaaatatgggatgctattaaggc 6449917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 609
Target Start/End: Complemental strand, 6456460 - 6456384
Alignment:
Q  533 ccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgctattaaggc 609  Q
    ||||| |||||||| || | | || |||||||||||| ||||||||||||| |||| ||||||||||||||||||||    
T  6456460 ccccatggacttcgtcttgcgttagaagactacccttatgctgttgatggactagaaatatgggatgctattaaggc 6456384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 6409934 - 6409835
Alignment:
Q  137 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 236  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||  |||  || ||||||||| |||||||||| || |||||    
T  6409934 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaactattacttccacactatcgtaacacaatgaacataaatgc 6409835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 6362932 - 6362830
Alignment:
Q  137 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 236  Q
    ||||||||||| ||||||| ||||||||   ||| ||||||||||| ||||||||||| ||||| |  || || ||||||||||| ||||| || |||||    
T  6362932 ttgagccattcgtcatagcaacaaataggcatctaagtgtggttcaccctattcataaacttctgcttccacattatcgtgacacgatgaacataaatgc 6362833  T
Q  237 act 239  Q
    |||    
T  6362832 act 6362830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 595
Target Start/End: Complemental strand, 6288037 - 6287944
Alignment:
Q  502 tagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgg 595  Q
    ||||||| |||||||| ||||| | | | | || ||||| ||||||||  |||||||||| ||||||| ||||| |||||||||||||||||||    
T  6288037 tagaggagtggctgttgaggatccaacttccccacacggccttcgccttctgataaaagattacccttatgctgctgatggattagagatatgg 6287944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 6262757 - 6262699
Alignment:
Q  324 agtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 382  Q
    |||||| ||||||||||||||| | |||||||| || ||||||||||||||||| ||||    
T  6262757 agtttataaggattgggtttttacagaccaagccctccctgctgatcttatcaaaaggt 6262699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 603
Target Start/End: Complemental strand, 6320674 - 6320564
Alignment:
Q  493 tgctttatttagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagata 592  Q
    |||| ||| ||||||| |||||||| ||||| | | | | || || ||| |||||||  ||||| | |||||||||| ||||| ||||||| ||||||||    
T  6320674 tgctatatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagaggactacccttatgctgctgatggactagagata 6320575  T
Q  593 tgggatgctat 603  Q
    |||||||||||    
T  6320574 tgggatgctat 6320564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 603
Target Start/End: Complemental strand, 6331132 - 6331026
Alignment:
Q  497 ttatttagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatggg 596  Q
    |||| ||||||| |||||||| ||||| | | | | || || ||| |||||||  ||||| | |||||||||| ||||| ||||||| ||||||||||||    
T  6331132 ttatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagaggactacccttatgctgctgatggactagagatatggg 6331033  T
Q  597 atgctat 603  Q
    |||||||    
T  6331032 atgctat 6331026  T

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Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 7471224 - 7471134
Alignment:
Q  137 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaa 227  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| | ||||||||| ||| |||  || |||||  |||||||||||||    
T  7471224 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccatattcataaacttttacttccacactactgtgacacaatgaa 7471134  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 6409746 - 6409689
Alignment:
Q  325 gtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 382  Q
    |||||||||||||||||||| || || ||||||||||||  |||||| ||||| ||||    
T  6409746 gtttacaaggattgggttttcccggatcaagcactacctaatgatctaatcaaaaggt 6409689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 607
Target Start/End: Complemental strand, 6390145 - 6390109
Alignment:
Q  571 tgctgttgatggattagagatatgggatgctattaag 607  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  6390145 tgctgttgatggactagagatatgggctgctattaag 6390109  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 36925655 - 36925758
Alignment:
Q  139 gagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcac 238  Q
    |||||||||||||||||| |||||||  |||| |||||  |||| ||||||||||||||  |||| ||||||| ||||||||| |||||||| |||| ||    
T  36925655 gagccattcatcatagcttcaaataggcgtcttagtgtacttcaccctattcataagctattacatcctcactttcgtgacaccatgaatataaatggac 36925754  T
Q  239 ttgc 242  Q
    ||||    
T  36925755 ttgc 36925758  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 47127158 - 47127110
Alignment:
Q  552 tgataaaagactacccttttgctgttgatggattagagatatgggatgc 600  Q
    ||||| |||||||||||||||||||||||||||| || |||||||||||    
T  47127158 tgatagaagactacccttttgctgttgatggattggaaatatgggatgc 47127110  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 382
Target Start/End: Original strand, 9605567 - 9605833
Alignment:
Q  116 ggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcg 215  Q
    |||||||||| |||   ||| ||||||||||||||||||| ||||| |||  ||| |||||  |||| |||||| ||||| | ||| | || || |  ||    
T  9605567 ggttgaatactcatgcagtggttgagccattcatcatagcaacaaacagacatcttagtgttcttcaccctattaataagttgctagatccccatttccg 9605666  T
Q  216 tgacacaatgaatatcaatgcacttgctcggagttcattgatcagtggaggtggcattatagagcaagcatttttgccaggaccgtacgctgttgagatg 315  Q
    ||||||||| |||||||| | ||||||||| | | |  | || | ||  | ||| || || ||| || ||||||| || || ||| |  |||||||||||    
T  9605667 tgacacaataaatatcaacggacttgctcgaaatgctctaattaatgctgatggaataatcgaggaaacatttttacctgggccgaattctgttgagatg 9605766  T
Q  316 tcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 382  Q
    || || ||||  |||||| ||||||||||  |||| |||||| |||| |||||||||||||||||||    
T  9605767 tcatcagcagcatacaagaattgggttttcactgatcaagcattaccggctgatcttatcaagaggt 9605833  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 607
Target Start/End: Original strand, 9606050 - 9606097
Alignment:
Q  560 gactacccttttgctgttgatggattagagatatgggatgctattaag 607  Q
    |||||||||| ||| ||||||||| | |||||||||||||||||||||    
T  9606050 gactacccttatgcagttgatggactcgagatatgggatgctattaag 9606097  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 9605326 - 9605398
Alignment:
Q  46 acaatttggcaattggccaaggcgtatgtagttgtaaatgacgcctgctttcaccaactcatgagtcactggt 118  Q
    |||||||||| ||||||||||||  ||||| ||||||||||  | ||||  || ||||||||||| |||||||    
T  9605326 acaatttggctattggccaaggctcatgtaattgtaaatgattcatgctaccatcaactcatgagccactggt 9605398  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 42689192 - 42689270
Alignment:
Q  304 gctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 382  Q
    ||||| || ||||| || || ||||||||| |||||||||| ||||| ||||| || || |||||||||||||||||||    
T  42689192 gctgtggaaatgtcttcagcggtttacaagaattgggttttccctgatcaagcccttccagctgatcttatcaagaggt 42689270  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 595
Target Start/End: Original strand, 42689380 - 42689438
Alignment:
Q  537 acggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgg 595  Q
    |||||||||| ||  ||||| | |||||||||| |||||||||||||||||||||||||    
T  42689380 acggacttcgtcttctgatagaggactacccttatgctgttgatggattagagatatgg 42689438  T

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