View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13052_low_23 (Length: 265)
Name: NF13052_low_23
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 39535931 - 39535708
Alignment:
| Q |
23 |
ataataatttgaaacaatgacataattcagtcccagtaataacattctattcgttgaacaaaataatgcggcaaataaatggggnnnnnnnctcaaagtt |
122 |
Q |
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| T |
39535931 |
ataataatttgaaacaatgacataattcagtcccagtaataacattctatgggttgaacaaaataatgcggcaaataaaaggg-aaaaaaactcaaagtt |
39535833 |
T |
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| Q |
123 |
ggataaataatatctatctaactcaatacatcatgtgtttgcacgtgcaaccaaaatgagaatcaaataaaactccaactatatcatcatcattaattca |
222 |
Q |
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| T |
39535832 |
ggataaataatatcta----actcaatacatcatgtgtttgcacgtgaaaccaaaatgagaataaaataaaactccaactatatcatcatcattaattca |
39535737 |
T |
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| Q |
223 |
taattatccatagcctaaaaagaaaatgt |
251 |
Q |
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| T |
39535736 |
taattatccatagcctaaaaagaaaatgt |
39535708 |
T |
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