View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13052_low_25 (Length: 237)
Name: NF13052_low_25
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 44814521 - 44814729
Alignment:
| Q |
16 |
atatagtccacagctcagtgcatgaaacttattccttggaatcaactcatccacatcttatgaaacaattgaatattgaaggggataaaagttccaaaac |
115 |
Q |
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| T |
44814521 |
atatagtccacagctcagtgcatgaaacttattccttggaatcaactcatccacatcttatgaaacaattgaatattgaaggggataaaagttccaaaac |
44814620 |
T |
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| Q |
116 |
atgacctattttactcttcctccgcaattacactaatatcacccttttccagcaaatcatgaaaggtcctggtttttctttgctcattccagtgatgcat |
215 |
Q |
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| T |
44814621 |
atgacctattttattcttcctccgcaattacgctaatctcacccttttccagcaaatcatgaaaggtcctggtttttctttgctcattccagtgatgcat |
44814720 |
T |
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| Q |
216 |
cttccaaac |
224 |
Q |
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| T |
44814721 |
cttccaaac |
44814729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 38956864 - 38956766
Alignment:
| Q |
123 |
attttactcttcctccgcaattacactaatatcacccttttccagcaaatcatgaaaggtcctggtttttctttgctcattccagtgatgcatcttcca |
221 |
Q |
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| T |
38956864 |
attttactcttcatctacaacaacactaatctcacccttttcgagtaaatcgtaaaaggtcctggtttttctctgttcattccaatgatgcatcttcca |
38956766 |
T |
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