View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13052_low_6 (Length: 473)
Name: NF13052_low_6
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 33382455 - 33382914
Alignment:
| Q |
1 |
gtgattttcattatggtaaacaaatacaaagtagttcctacttttttaaagaatctctaaaatttaatctcaagattatgtattgagtatcataatcact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33382455 |
gtgattttcattatggtaaacaaatacaaagtagttcctacttttttaaagaatctctaaaatttaatctcaagattatgtattgagtatcataatcact |
33382554 |
T |
|
| Q |
101 |
tttttataactctaacaaacagatccttaatctatgttgtttttcaacatgagtgagtttttccctcatatgtgatgcgacaataccataagttaatttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33382555 |
tttttataactctaacaaacagatccttaatctatgttgtttttcaacatgagtgagtttttccctcatatgtgatgtgacaataccataagttaatttt |
33382654 |
T |
|
| Q |
201 |
tatatgattgcagcatgtgaaatgtgcagccttaagggatttcaatgctagaagtgctgaagtcatctcatatctgtgacgtgagtgcagttgactatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33382655 |
tatatgattgcagcatgtgaaatgtgcagccttaagggatttcaatgctagaagtgctgaagtcatctcatatctgtgacgtgagtgcagttgactatat |
33382754 |
T |
|
| Q |
301 |
aggatatttctgagtcgcattgtaaaagttaataaatttgttcatgaaattaagnnnnnnnngcgtattactcatttccttgttgcgaacacatggttac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33382755 |
aggatatttctgagtcgcattgtaaaagttaataaatttgttcatgaaattaa-aaaaaaaagcgtattactcatttccttgttgcgaacacatggttac |
33382853 |
T |
|
| Q |
401 |
ttttcatgttccgctttactgtaaagtaaccatggtgcaattctggacatgttctcatatt |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33382854 |
ttttcatgttccgctttactgtaaagtaaccatggtgcaattctggacatgttctcatatt |
33382914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 180 - 301
Target Start/End: Complemental strand, 12579324 - 12579210
Alignment:
| Q |
180 |
acaataccataagttaatttttatatgattgcagcatgtgaaatgtgcagccttaagggatttcaatgctagaagtgctgaagtcatctcatatctgtga |
279 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12579324 |
acaataccatgggttcatttttatatgattgcagcatgtgaaacgtgcagccttgagggatttcaatgctagaagtgctgaagt-------tatctgtga |
12579232 |
T |
|
| Q |
280 |
cgtgagtgcagttgactatata |
301 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
12579231 |
ggtgagtgcagtttactatata |
12579210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 46663760 - 46663789
Alignment:
| Q |
1 |
gtgattttcattatggtaaacaaatacaaa |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
46663760 |
gtgattttcattatggtaaacaaatacaaa |
46663789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 38565649 - 38565550
Alignment:
| Q |
2 |
tgattttcattatggtaaacaaatacaaagtagttcctacttttttaaagaatctctaaaatttaatctcaagattatgtattgagtatcataatcactt |
101 |
Q |
| |
|
||||||||||| || |||||||| |||||| | | || ||||||| || ||||||||||| |||||||| | || |||||||||||| |||||||| |
|
|
| T |
38565649 |
tgattttcattctgctaaacaaacacaaagctgcttctgctttttttaaaaatctctaaaaattaatctctaaat----tattgagtatcaaaatcactt |
38565554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University