View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13052_low_7 (Length: 424)

Name: NF13052_low_7
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13052_low_7
NF13052_low_7
[»] chr5 (8 HSPs)
chr5 (16-414)||(38156862-38157259)
chr5 (16-160)||(38178221-38178365)
chr5 (16-160)||(38205445-38205589)
chr5 (29-149)||(38221208-38221329)
chr5 (29-134)||(38167917-38168022)
chr5 (29-134)||(38199082-38199187)
chr5 (187-245)||(38171240-38171298)
chr5 (182-227)||(38221340-38221385)
[»] chr4 (1 HSPs)
chr4 (47-114)||(2995611-2995678)
[»] chr3 (2 HSPs)
chr3 (41-93)||(43246161-43246213)
chr3 (46-79)||(44804565-44804598)
[»] chr1 (2 HSPs)
chr1 (182-243)||(15707556-15707617)
chr1 (56-112)||(2239986-2240042)


Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 38156862 - 38157259
Alignment:
Q  16 aattttaacataaatgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatgatattgtcg 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38156862 aattttaacatacatgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatgatattgtca 38156961  T
Q  116 cgtaaatgtactttgtaatacgctgattagtacatagtattgtttgatagcaactatagttgcactatagtactatagcatagcggaattctaacaacct 215  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38156962 cgtaagtgtattttgtaatacgctgattagtacatagtgttgtttgatagcaactatagttgcactatagtactatagcatagcggaattctaacaacct 38157061  T
Q  216 attattttctacaatttgtgattgacaatactattgtttttatgacaggacgtaaaaataggcatgcgtggataaaagacttaatattcaatggcttgaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157062 attattttctacaatttgtgattgacaatactattgtttttatgacaggacgtaaaaataggcatgcgtggataaaagacttaatattcaatggcttgaa 38157161  T
Q  316 taataatagtacgtactaatatgaattgtggaaataacagttttcgtaaagtttcttctttttcttccctgaccccttcaaagaggatcgtgtttcatc 414  Q
    |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157162 taataataata-gtcctaatatgaattgtggaaataacagttttcgtaaagtttcttctttttcttccctgaccccttcaaagaggatcgtgtttcatc 38157259  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 38178365 - 38178221
Alignment:
Q  16 aattttaacataaatgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatgatattgtcg 115  Q
    |||||||| ||| |||||||||||||||||||| ||||||| | || ||||||||||||||||| ||   |||||||| ||||||||||||||||||||     
T  38178365 aattttaagatacatgtaatgtaaatgagtttattgaagatccgttatcggtgtaaaatagttttactcgaacatccattgaaaactcatgatattgtca 38178266  T
Q  116 cgtaaatgtactttgtaatacgctgattagtacatagtattgttt 160  Q
    || ||||||||||||||||||||||||||| ||||||| ||||||    
T  38178265 cgcaaatgtactttgtaatacgctgattagcacatagtgttgttt 38178221  T

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Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 38205589 - 38205445
Alignment:
Q  16 aattttaacataaatgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatgatattgtcg 115  Q
    |||||||| ||| |||||||||||||||||||| ||||||| | || ||||||||||||||||| ||   |||||||| ||||||||||||||||||||     
T  38205589 aattttaagatacatgtaatgtaaatgagtttattgaagatccgttatcggtgtaaaatagttttactcgaacatccattgaaaactcatgatattgtca 38205490  T
Q  116 cgtaaatgtactttgtaatacgctgattagtacatagtattgttt 160  Q
    || ||||||||||||||||||||||||||| ||||||| ||||||    
T  38205489 cgcaaatgtactttgtaatacgctgattagcacatagtgttgttt 38205445  T

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Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 38221208 - 38221329
Alignment:
Q  29 atgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcat-gatattgtcgcgtaaatgtact 127  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||| ||||||||| |||||||||||  |||||||| ||||||||||||    
T  38221208 atgtaatgtaaatgagcttaatgaagatacattgtcagtgtaaaatagttttacaccaacatccattgaaaactcatatatattgtcacgtaaatgtact 38221307  T
Q  128 ttgtaatacgctgattagtaca 149  Q
    | |||||||| |||||||||||    
T  38221308 tagtaatacgttgattagtaca 38221329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 38167917 - 38168022
Alignment:
Q  29 atgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatgatattgtcgcgtaaatgtactt 128  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||| |||||   |||||    
T  38167917 atgtaatgtaaatgagtttaatgaaaatgcattgtcggtctaaaatagttttacaccaacatccattgaaaactcatgatattgtcacgtaagcctactt 38168016  T
Q  129 tgtaat 134  Q
    ||||||    
T  38168017 tgtaat 38168022  T

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Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 38199187 - 38199082
Alignment:
Q  29 atgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatgatattgtcgcgtaaatgtactt 128  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||| |||||   |||||    
T  38199187 atgtaatgtaaatgagtttaatgaaaatgcattgtcggtctaaaatagttttacaccaacatccattgaaaactcatgatattgtcacgtaagcctactt 38199088  T
Q  129 tgtaat 134  Q
    ||||||    
T  38199087 tgtaat 38199082  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 38171240 - 38171298
Alignment:
Q  187 actatagcatagcggaattctaacaacctattattttctacaatttgtgattgacaata 245  Q
    |||||||||||||||||||| ||||| ||||||  |||| |||| || |||||||||||    
T  38171240 actatagcatagcggaattcgaacaagctattaacttctgcaatctgggattgacaata 38171298  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 38221340 - 38221385
Alignment:
Q  182 atagtactatagcatagcggaattctaacaacctattattttctac 227  Q
    |||| |||||||| ||||||||||| |||||||| |||||||||||    
T  38221340 ataggactatagcgtagcggaattccaacaacctgttattttctac 38221385  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 2995611 - 2995678
Alignment:
Q  47 taatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatgatattgtc 114  Q
    ||||| ||||||||| |||||||||| |||||| ||||||||||| | | |||||||||||| |||||    
T  2995611 taatggagatgcattatcggtgtaaactagttttacatcaacatctaataaaaactcatgatgttgtc 2995678  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 43246161 - 43246213
Alignment:
Q  41 tgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatcca 93  Q
    |||||||||||||||||||||| ||||||||| |||||| ||| || ||||||    
T  43246161 tgagtttaatgaagatgcattgacggtgtaaactagttttacaacatcatcca 43246213  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 44804565 - 44804598
Alignment:
Q  46 ttaatgaagatgcattgtcggtgtaaaatagttt 79  Q
    ||||||||||||||||| ||||||||||||||||    
T  44804565 ttaatgaagatgcattgacggtgtaaaatagttt 44804598  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 15707617 - 15707556
Alignment:
Q  182 atagtactatagcatagcggaattctaacaacctattattttctacaatttgtgattgacaa 243  Q
    |||| |||||||||||||||||||  ||||| ||  |||||| |||||| ||||||||||||    
T  15707617 atagcactatagcatagcggaatttgaacaaactgctattttttacaatctgtgattgacaa 15707556  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 2240042 - 2239986
Alignment:
Q  56 tgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatgatattg 112  Q
    ||||||||||||||||| |||||| ||||| ||||| | ||| |||||| |||||||    
T  2240042 tgcattgtcggtgtaaactagttttacatcgacatctaatgagaactcaagatattg 2239986  T

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