View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13052_low_9 (Length: 393)
Name: NF13052_low_9
Description: NF13052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13052_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 173 - 331
Target Start/End: Complemental strand, 40679200 - 40679042
Alignment:
| Q |
173 |
ttacaaggtattttaatcgcctaatttgtcgacaatgtcatgtgagaattgaacatcttcggcgaacaacggtgaagactaaatcattgaactaggtaat |
272 |
Q |
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| T |
40679200 |
ttacaaggtattttaatcgcctaatttgtcgacaatgccatgtgaggattgaacatcttcgacgaacaacggtgaagactaaatcattgaactagataat |
40679101 |
T |
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| Q |
273 |
acaataaataacaaatctctcactcaagagatttaacattgctgcattctcatggttgg |
331 |
Q |
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| T |
40679100 |
acaataaataacaaatctctcactcaagagatttaacattgctgcattctcatggttgg |
40679042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 40679331 - 40679201
Alignment:
| Q |
11 |
agagatagaatgatgaaatactctagtgatggataaatatatctctattatccgtaactaaaccagtgttttaaaccaagtgatagaatttgtgatggaa |
110 |
Q |
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| T |
40679331 |
agagatagaatgatgaaatactctagtgatggataaatatatctctattatccgtaactaaaccagtgttttaaaccaagtgatagaatttgtgatggaa |
40679232 |
T |
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| Q |
111 |
ctgtttgtgagggatacacttttgtctaatt |
141 |
Q |
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| T |
40679231 |
ctgtttgtgagggatacacttttgtctaatt |
40679201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 40678999 - 40678951
Alignment:
| Q |
328 |
ttggtgggaatcaaag-aatcgggagacaaaatatcattgcttctgtac |
375 |
Q |
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| T |
40678999 |
ttggtgggaatcaaaggaatagggagacaaaatatcattgcttctgtac |
40678951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 3765334 - 3765294
Alignment:
| Q |
290 |
tctcactcaagagatttaacattgctgcattctcatggttg |
330 |
Q |
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| T |
3765334 |
tctccctcaagagatttaacactgctgcattctcagggttg |
3765294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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