View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13053_high_4 (Length: 273)

Name: NF13053_high_4
Description: NF13053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13053_high_4
NF13053_high_4
[»] chr7 (3 HSPs)
chr7 (1-265)||(4713828-4714092)
chr7 (87-131)||(35562426-35562471)
chr7 (86-169)||(21552454-21552538)
[»] chr1 (2 HSPs)
chr1 (87-169)||(27356760-27356841)
chr1 (86-169)||(13691757-13691841)
[»] chr4 (3 HSPs)
chr4 (107-169)||(29257279-29257340)
chr4 (86-169)||(23926072-23926156)
chr4 (86-169)||(5388546-5388630)
[»] chr5 (5 HSPs)
chr5 (107-168)||(39591102-39591163)
chr5 (86-147)||(6074757-6074819)
chr5 (100-170)||(8957257-8957327)
chr5 (88-128)||(34848590-34848631)
chr5 (86-130)||(29154286-29154330)
[»] chr8 (3 HSPs)
chr8 (100-130)||(1215377-1215407)
chr8 (86-130)||(14530946-14530991)
chr8 (86-169)||(32920683-32920767)
[»] chr2 (2 HSPs)
chr2 (101-130)||(5071408-5071437)
chr2 (100-169)||(35353689-35353758)
[»] chr6 (1 HSPs)
chr6 (102-130)||(11425992-11426020)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 4713828 - 4714092
Alignment:
Q  1 taatcagacttaacttttcaatgtactacctctttctcaaaataatagtcgtttaagacttgtgcacatcgatttttctccttccctaaattgtttttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713828 taatcagacttaacttttcaatgtactacctctttctcaaaataatagtcgtttaagacttgtgcacatcgatttttctccttccctaaattgtttttcc 4713927  T
Q  101 cttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatcttaatttactccattgccgctggtcctcttccgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4713928 cttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatcttaatttactccattgccactggtcctcttccgg 4714027  T
Q  201 tgacggcaacaaaatagcttgactttcaccctcattgttattatatctctcctattcttcatctc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4714028 tgacggcaacaaaatagcttgactttcaccctcattgttattatatctctcctattcctcatctc 4714092  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 35562426 - 35562471
Alignment:
Q  87 taaattgtttttccc-ttctcttttatttaaataagtgattttcaa 131  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  35562426 taaattgtttttctcattctcttttatttaaataagtgattttcaa 35562471  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 21552538 - 21552454
Alignment:
Q  86 ctaaattgtttttc-ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 169  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||||  |||  ||| |||||| |||| || ||||||| |||||    
T  21552538 ctaaatcgtttttctccttctcttttatttaaataaatgattttcacatcggattaggtttttctttcgtgatttcgtcgtctta 21552454  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 27356841 - 27356760
Alignment:
Q  87 taaattgtttttcccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 169  Q
    |||||||||||||| | || ||||||||||||||||||||||||  |||| ||| |||||| |||| || |||||||||||||    
T  27356841 taaattgtttttccttcct-ttttatttaaataagtgattttcacatcgaattaggtttttttttcgtgatttcgtcatctta 27356760  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 13691841 - 13691757
Alignment:
Q  86 ctaaattgtttttc-ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 169  Q
    |||||| ||||||| ||||| ||| |||||||||||||||||||||  |||| ||| |||| | |||  || |||||||||||||    
T  13691841 ctaaatcgtttttctccttcacttctatttaaataagtgattttcacatcgaattaggtttctcttttgtgatttcgtcatctta 13691757  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 29257279 - 29257340
Alignment:
Q  107 ttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 169  Q
    ||||||||||||||||||||||||  || ||||| |||||||||||||| ||| |||||||||    
T  29257279 ttttatttaaataagtgattttcacttctattta-gtttttatttcatgattttgtcatctta 29257340  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 23926072 - 23926156
Alignment:
Q  86 ctaaattgtttttc-ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 169  Q
    |||| ||||||||| ||||| ||| |||||||||||||||||||||  |||| ||| |||||| |||| || ||||||| |||||    
T  23926072 ctaacttgtttttctccttcccttctatttaaataagtgattttcacatcgagttaggtttttctttcgtgatttcgtcgtctta 23926156  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 5388546 - 5388630
Alignment:
Q  86 ctaaattgtttttc-ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 169  Q
    |||||| ||||||| ||||| || ||||||||||||||||||||||  |||| ||| |||||| |||| ||  |||||| |||||    
T  5388546 ctaaatcgtttttctccttccctcttatttaaataagtgattttcacatcgaattaggtttttctttcgtgagttcgtcgtctta 5388630  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 39591102 - 39591163
Alignment:
Q  107 ttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctt 168  Q
    ||||||||||||||||||||||||| || ||||| |||||| |||| || ||||||| ||||    
T  39591102 ttttatttaaataagtgattttcaaatcaatttaggtttttctttcgtgatttcgtcttctt 39591163  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 6074819 - 6074757
Alignment:
Q  86 ctaaattgtttttc-ccttctcttttatttaaataagtgattttcaagtcgatttatgttttt 147  Q
    |||||| ||||||| ||||| |||||||||||||||||||||||||  |||| ||| ||||||    
T  6074819 ctaaatcgtttttctccttcccttttatttaaataagtgattttcacatcgaattaggttttt 6074757  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 8957257 - 8957327
Alignment:
Q  100 ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatcttaa 170  Q
    |||||| ||||||||||||||||||||||||  |||| ||| |||||| |||| || |||| || ||||||    
T  8957257 ccttcttttttatttaaataagtgattttcacatcgaattaggtttttctttcgtgatttcatcgtcttaa 8957327  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 34848631 - 34848590
Alignment:
Q  88 aaattgtttttcccttctcttttat-ttaaataagtgatttt 128  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  34848631 aaattgtttttcctttctcttttatgttaaataagtgatttt 34848590  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 29154286 - 29154330
Alignment:
Q  86 ctaaattgtttttcccttctcttttatttaaataagtgattttca 130  Q
    |||| |||||||| | |||||||||||| ||||||||||||||||    
T  29154286 ctaacttgttttttctttctcttttattgaaataagtgattttca 29154330  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 130
Target Start/End: Complemental strand, 1215407 - 1215377
Alignment:
Q  100 ccttctcttttatttaaataagtgattttca 130  Q
    |||||||||||||||||||||||||||||||    
T  1215407 ccttctcttttatttaaataagtgattttca 1215377  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 14530991 - 14530946
Alignment:
Q  86 ctaaattgtttttc-ccttctcttttatttaaataagtgattttca 130  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||    
T  14530991 ctaaatcgtttttctccttctcttctatttaaataagtgattttca 14530946  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 32920683 - 32920767
Alignment:
Q  86 ctaaattgtttttc-ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 169  Q
    |||||| ||||||| |||||  ||||||||||||||||||||||||  |||| ||| |||||| |||  || ||||||| |||||    
T  32920683 ctaaatcgtttttctccttcctttttatttaaataagtgattttcacatcgaattaggtttttcttttgtgatttcgtcgtctta 32920767  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 130
Target Start/End: Complemental strand, 5071437 - 5071408
Alignment:
Q  101 cttctcttttatttaaataagtgattttca 130  Q
    ||||||||||||||||||||||||||||||    
T  5071437 cttctcttttatttaaataagtgattttca 5071408  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 35353689 - 35353758
Alignment:
Q  100 ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 169  Q
    ||||| ||||||||||||||||||||||| |  |||| ||| |||||| |||| || ||||||| |||||    
T  35353689 ccttcccttttatttaaataagtgatttttacatcgaattaggtttttctttcgtgatttcgtcgtctta 35353758  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 11425992 - 11426020
Alignment:
Q  102 ttctcttttatttaaataagtgattttca 130  Q
    |||||||||||||||||||||||||||||    
T  11425992 ttctcttttatttaaataagtgattttca 11426020  T

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