View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13053_low_1 (Length: 931)
Name: NF13053_low_1
Description: NF13053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13053_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 196 - 541
Target Start/End: Complemental strand, 46480118 - 46479773
Alignment:
| Q |
196 |
acattattagatttgatgccaattactactactgattagttttgctcatactcattgatttagttagtttggtacactgagcataattaccaaaaataga |
295 |
Q |
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| T |
46480118 |
acattattagatttgatgccaattactactactgattagttttgctcatactcattgatttagttagtttggtacactgagcataattaccaaaaataga |
46480019 |
T |
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| Q |
296 |
tgacgtataagcacactttatgtaatgattatgtaacaaccggcttgcttgtgttaggtttaaaatgttcaacacgctaaacacattaacatacgacaag |
395 |
Q |
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| T |
46480018 |
tgacgtataagcacactttatgtaatgattatgtaacaaccggcttgcttgtgttaggtttaaaatgttcaacacgctaaacacattaacatacgacaag |
46479919 |
T |
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| Q |
396 |
gaatcaagacaagtggaaagatataagcttgattatgtaccgaaaatataactgataatgaacaattaactataaaaatctacgaaaaatggcaattaaa |
495 |
Q |
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| T |
46479918 |
caatcaagacaaatggaaagatataagcttgattatgtaccgaaaatataactgataatgaacaattaactataaaaatctacgaaaaatggcaattaaa |
46479819 |
T |
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| Q |
496 |
aatcattaaatggtcaatcttaattggtttggaactactaacagtc |
541 |
Q |
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| T |
46479818 |
aatcattaaatggtcaatcttaattggtttggaactactaacagtc |
46479773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 46480288 - 46480118
Alignment:
| Q |
8 |
cagcacagaccacacccaagggcaactcagtcattcatccaccttgaatttcccaccactactccatgtgagttaggagtacatcttttactttacatgt |
107 |
Q |
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| T |
46480288 |
cagcacagaccacacccaagggcaactcagtcattcatccaccttgaatttcccaccactactccatgtgagttagtagtacatcttttactttacatgt |
46480189 |
T |
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| Q |
108 |
gaatgt------gaatattgcggaccatactcacaccagaagcgcgcgtgctttcattttacaactgctaa |
172 |
Q |
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| T |
46480188 |
gaatgtgaatgtgaatattgcggaccatactcacaccagaagcgcgcgtgctttcattttacaactactaa |
46480118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 674 - 780
Target Start/End: Complemental strand, 46479639 - 46479533
Alignment:
| Q |
674 |
cacattaattggaccaccaccggaaagaccaatggagaaatagcgcgccaaacatagtagagcagattaggcacaattttaagagcgacccaccaccatg |
773 |
Q |
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| T |
46479639 |
cacattaattggaccaccaccggaaagaccaatcgagaaataacgcgccaaacatagtagagcagattaggcacaattttaagagcgacccaccaccatg |
46479540 |
T |
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| Q |
774 |
ccttgtc |
780 |
Q |
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| T |
46479539 |
ccttgtc |
46479533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 852 - 913
Target Start/End: Complemental strand, 46479461 - 46479400
Alignment:
| Q |
852 |
aaccagttttgctaaggtgtgcgtgatctaggtggagtccttgattcaggaggaggagtatg |
913 |
Q |
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| T |
46479461 |
aaccagttttgctaaggtgtgcgtgatctaggtggagtccttgattcaggaggaggagtatg |
46479400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 605
Target Start/End: Complemental strand, 46479750 - 46479709
Alignment:
| Q |
564 |
ccaaccccactttaattaacaattttcaaactctccaccctg |
605 |
Q |
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| T |
46479750 |
ccaaccccactttaattaacaattttcaaactctccaccctg |
46479709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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