View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13053_low_3 (Length: 380)

Name: NF13053_low_3
Description: NF13053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13053_low_3
NF13053_low_3
[»] chr3 (5 HSPs)
chr3 (15-362)||(43906651-43906997)
chr3 (242-281)||(43895418-43895457)
chr3 (99-154)||(39964307-39964362)
chr3 (99-157)||(10841767-10841825)
chr3 (100-136)||(50143907-50143943)
[»] chr4 (7 HSPs)
chr4 (92-138)||(19936500-19936546)
chr4 (81-131)||(16203436-16203486)
chr4 (89-154)||(6087506-6087571)
chr4 (93-154)||(51313473-51313534)
chr4 (78-134)||(1122174-1122230)
chr4 (94-138)||(9993533-9993577)
chr4 (100-136)||(51333458-51333494)
[»] chr7 (6 HSPs)
chr7 (81-154)||(24617791-24617864)
chr7 (94-154)||(37491280-37491340)
chr7 (99-137)||(48445976-48446014)
chr7 (101-137)||(18713532-18713568)
chr7 (94-138)||(36502335-36502379)
chr7 (94-138)||(44819671-44819715)
[»] chr8 (3 HSPs)
chr8 (94-138)||(24052917-24052961)
chr8 (94-138)||(1988932-1988976)
chr8 (99-151)||(15037762-15037814)
[»] chr2 (2 HSPs)
chr2 (81-137)||(29765754-29765810)
chr2 (81-137)||(14928105-14928161)
[»] chr1 (8 HSPs)
chr1 (93-137)||(11016679-11016723)
chr1 (99-154)||(5246214-5246269)
chr1 (93-131)||(15497488-15497526)
chr1 (94-151)||(3906837-3906894)
chr1 (93-138)||(6156640-6156685)
chr1 (100-137)||(30800299-30800336)
chr1 (93-154)||(39940559-39940620)
chr1 (94-138)||(19175677-19175721)
[»] chr6 (1 HSPs)
chr6 (99-137)||(26388203-26388241)
[»] chr5 (3 HSPs)
chr5 (99-137)||(7135342-7135380)
chr5 (99-137)||(21032622-21032660)
chr5 (94-138)||(14144334-14144378)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 7e-99; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 43906651 - 43906997
Alignment:
Q  15 gacgtgtgttatacctatacatggtcacaagagttaaataaattgaataaatttgatcagtgaac-aatacatcatctaatcacaattataaacaaaaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || ||| ||||||||||||||||||||||||||||||||||    
T  43906651 gacgtgtgttatacctatacatggtcacaagagttaaataaattgaataaatttgttt-gtaaactaatacatcatctaatcacaattataaacaaaaat 43906749  T
Q  114 ctactttttagatttattgaataaaaagtgtatgtagtctaataagccacgtacattattaattaaataaatct-nnnnnnnnttgtttataatatatac 212  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||||| |||||         |||||||||||| ||||    
T  43906750 ctactttttatatttattgaataaaaggtgtatgtagtctaataagtcacatacattattgattaaatgaatctaaaaaaaaattgtttataataaatac 43906849  T
Q  213 gataggtgtacgtactataccgtaaaatttaaaattagtccgtggacaaaccgaaaaactaacatggtcaactctaatcccctnnnnnnnnngtggttca 312  Q
    || ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||  | ||||||||||         ||||||||    
T  43906850 gaaaggtggacgtactatactgtaaaatttaaaattagttcgtggacaaaccgaaaaactaacatggtc--cactaatcccctcaaaaaaaagtggttca 43906947  T
Q  313 ctattatannnnnnnaagggacaaataatacagcctcctggtacactaat 362  Q
    ||||||||       |||||||||||||||||||||||||||||||||||    
T  43906948 ctattatatttttttaagggacaaataatacagcctcctggtacactaat 43906997  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 281
Target Start/End: Original strand, 43895418 - 43895457
Alignment:
Q  242 taaaattagtccgtggacaaaccgaaaaactaacatggtc 281  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  43895418 taaaattagtccgtggacaaaccaaaaaactaacatggtc 43895457  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 39964307 - 39964362
Alignment:
Q  99 attataaacaaaaatctactttttagatttattgaataaaaagtgtatgtagtcta 154  Q
    ||||||| |||||| |||||||||||||| ||||||||||   |||||||||||||    
T  39964307 attataagcaaaaaactactttttagattcattgaataaattatgtatgtagtcta 39964362  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 10841825 - 10841767
Alignment:
Q  99 attataaacaaaaatctactttttagatttattgaataaaaagtgtatgtagtctaata 157  Q
    ||||||| ||||||||||| |||| |||||||| ||||||   ||||||||||||||||    
T  10841825 attataagcaaaaatctacatttttgatttatttaataaatgatgtatgtagtctaata 10841767  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 50143907 - 50143943
Alignment:
Q  100 ttataaacaaaaatctactttttagatttattgaata 136  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  50143907 ttataaacaaaaatctattttttagatttatggaata 50143943  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 19936500 - 19936546
Alignment:
Q  92 aatcacaattataaacaaaaatctactttttagatttattgaataaa 138  Q
    |||||| |||||||||||||||| |||||||||||| ||||||||||    
T  19936500 aatcactattataaacaaaaatcaactttttagattcattgaataaa 19936546  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 16203486 - 16203436
Alignment:
Q  81 atacatcatctaatcacaattataaacaaaaatctactttttagatttatt 131  Q
    ||||||||||  ||||| ||||||||||||||| ||| |||||||||||||    
T  16203486 atacatcatccgatcactattataaacaaaaatttacattttagatttatt 16203436  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 6087571 - 6087506
Alignment:
Q  89 tctaatcacaattataaacaaaaatctactttttagatttattgaataaaaagtgtatgtagtcta 154  Q
    |||| |||||||||||| ||||||| || |||| ||||||||| ||||||   |||||||||||||    
T  6087571 tctagtcacaattataagcaaaaatttaattttcagatttattcaataaatgatgtatgtagtcta 6087506  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 51313473 - 51313534
Alignment:
Q  93 atcacaattataaacaaaaatctactttttagatttattgaataaaaagtgtatgtagtcta 154  Q
    |||||| |||||||||||||| |||||||||| || |||||||| | | ||||| |||||||    
T  51313473 atcacatttataaacaaaaatgtactttttagcttcattgaatacataatgtatttagtcta 51313534  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 1122174 - 1122230
Alignment:
Q  78 acaatacatcatctaatcacaattataaacaaaaatctactttttagatttattgaa 134  Q
    ||||||||||| ||  |||| ||||| |||||||||||| ||||||||| |||||||    
T  1122174 acaatacatcaacttgtcactattatgaacaaaaatctattttttagatctattgaa 1122230  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 9993577 - 9993533
Alignment:
Q  94 tcacaattataaacaaaaatctactttttagatttattgaataaa 138  Q
    |||| |||||||||||||||  |||||||||||||||| ||||||    
T  9993577 tcactattataaacaaaaattcactttttagatttattcaataaa 9993533  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 51333458 - 51333494
Alignment:
Q  100 ttataaacaaaaatctactttttagatttattgaata 136  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  51333458 ttataaacaaaaaactactttttaaatttattgaata 51333494  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 24617791 - 24617864
Alignment:
Q  81 atacatcatctaatcacaattataaacaaaaatctactttttagatttattgaataaaaagtgtatgtagtcta 154  Q
    |||||||||| |||||  ||||||||||||||| || |||||||||| ||| |||||| | ||||| |||||||    
T  24617791 atacatcatccaatcagtattataaacaaaaatgtattttttagattcattcaataaataatgtatatagtcta 24617864  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 37491280 - 37491340
Alignment:
Q  94 tcacaattataaacaaaaatctactttttagatttattgaataaaaagtgtatgtagtcta 154  Q
    |||| ||||||| ||||||| ||||||||||||||||| ||||||   |||||||||||||    
T  37491280 tcactattataagcaaaaatttactttttagatttattaaataaatgatgtatgtagtcta 37491340  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 48445976 - 48446014
Alignment:
Q  99 attataaacaaaaatctactttttagatttattgaataa 137  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  48445976 attataaagaaaaatttactttttagatttattgaataa 48446014  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 18713568 - 18713532
Alignment:
Q  101 tataaacaaaaatctactttttagatttattgaataa 137  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  18713568 tataaacaaaaatgtactttttagattaattgaataa 18713532  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 36502379 - 36502335
Alignment:
Q  94 tcacaattataaacaaaaatctactttttagatttattgaataaa 138  Q
    |||| ||||||||||||||| || |||||||||||| ||||||||    
T  36502379 tcactattataaacaaaaatatattttttagatttactgaataaa 36502335  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 44819671 - 44819715
Alignment:
Q  94 tcacaattataaacaaaaatctactttttagatttattgaataaa 138  Q
    |||| ||||||||||||||| || |||||||||||||| ||||||    
T  44819671 tcactattataaacaaaaatgtattttttagatttattaaataaa 44819715  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 24052961 - 24052917
Alignment:
Q  94 tcacaattataaacaaaaatctactttttagatttattgaataaa 138  Q
    |||| |||||||||||||||||||||||||| || ||||||||||    
T  24052961 tcactattataaacaaaaatctactttttaggttcattgaataaa 24052917  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 1988976 - 1988932
Alignment:
Q  94 tcacaattataaacaaaaatctactttttagatttattgaataaa 138  Q
    |||| ||||||||||||||| || |||||| ||||||||||||||    
T  1988976 tcactattataaacaaaaatatattttttaaatttattgaataaa 1988932  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 15037762 - 15037814
Alignment:
Q  99 attataaacaaaaatctactttttagatttattgaataaaaagtgtatgtagt 151  Q
    |||||||||||||||||||||||||| || ||| ||||||   ||||||||||    
T  15037762 attataaacaaaaatctactttttaggttcattcaataaatgatgtatgtagt 15037814  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 29765810 - 29765754
Alignment:
Q  81 atacatcatctaatcacaattataaacaaaaatctactttttagatttattgaataa 137  Q
    ||||| |||||  |||||||||||| |||||||| |||||||||||| |||||||||    
T  29765810 atacaccatctcgtcacaattataaccaaaaatcaactttttagattcattgaataa 29765754  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 14928105 - 14928161
Alignment:
Q  81 atacatcatctaatcacaattataaacaaaaatctactttttagatttattgaataa 137  Q
    ||||||||||   ||||||||||||| |||||||||| |||||  ||||||||||||    
T  14928105 atacatcatccgttcacaattataaataaaaatctacattttaagtttattgaataa 14928161  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 11016723 - 11016679
Alignment:
Q  93 atcacaattataaacaaaaatctactttttagatttattgaataa 137  Q
    |||||| ||||||||||||||| ||||||||| ||||||||||||    
T  11016723 atcacatttataaacaaaaatcaactttttaggtttattgaataa 11016679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 5246269 - 5246214
Alignment:
Q  99 attataaacaaaaatctactttttagatttattgaataaaaagtgtatgtagtcta 154  Q
    |||||||||||||| ||| |||||||||| ||||||||||   |||||||||||||    
T  5246269 attataaacaaaaaactattttttagattcattgaataaatgatgtatgtagtcta 5246214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 15497488 - 15497526
Alignment:
Q  93 atcacaattataaacaaaaatctactttttagatttatt 131  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  15497488 atcacatttataaacaaaaatcaactttttagatttatt 15497526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 3906894 - 3906837
Alignment:
Q  94 tcacaattataaacaaaaatctactttttagatttattgaataaaaagtgtatgtagt 151  Q
    |||| ||||||||||||||| || |||||||||| ||| ||||||  |||||||||||    
T  3906894 tcactattataaacaaaaatttattttttagattcatttaataaatggtgtatgtagt 3906837  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 6156640 - 6156685
Alignment:
Q  93 atcacaattataaacaaaaatctactttttagatttattgaataaa 138  Q
    ||||| |||||||||||||||| |||||||||||| ||| ||||||    
T  6156640 atcactattataaacaaaaatcaactttttagattcattcaataaa 6156685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 30800336 - 30800299
Alignment:
Q  100 ttataaacaaaaatctactttttagatttattgaataa 137  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  30800336 ttataaacaaaactctactttttagatatattgaataa 30800299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 39940620 - 39940559
Alignment:
Q  93 atcacaattataaacaaaaatctactttttagatttattgaataaaaagtgtatgtagtcta 154  Q
    ||||| |||||||  |||||| ||||||||||||| ||| |||||| | |||||||||||||    
T  39940620 atcactattataagtaaaaatttactttttagattcattcaataaataatgtatgtagtcta 39940559  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 19175721 - 19175677
Alignment:
Q  94 tcacaattataaacaaaaatctactttttagatttattgaataaa 138  Q
    |||| ||||||| ||||||||||||||||||||| ||| ||||||    
T  19175721 tcactattataagcaaaaatctactttttagattcattcaataaa 19175677  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 26388203 - 26388241
Alignment:
Q  99 attataaacaaaaatctactttttagatttattgaataa 137  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  26388203 attataaacaaaactctactttttagatatattgaataa 26388241  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 7135380 - 7135342
Alignment:
Q  99 attataaacaaaaatctactttttagatttattgaataa 137  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  7135380 attataaacaaaaaactacgttttagatttattgaataa 7135342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 21032660 - 21032622
Alignment:
Q  99 attataaacaaaaatctactttttagatttattgaataa 137  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  21032660 attataaacaaaattctactttttagatatattgaataa 21032622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 14144334 - 14144378
Alignment:
Q  94 tcacaattataaacaaaaatctactttttagatttattgaataaa 138  Q
    |||| ||||||| || ||||||||||||||| |||||||||||||    
T  14144334 tcactattataagcataaatctactttttaggtttattgaataaa 14144378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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