View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13053_low_7 (Length: 223)
Name: NF13053_low_7
Description: NF13053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13053_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 42610512 - 42610702
Alignment:
| Q |
17 |
acatatgataaaggaattaaatcacctgatgcagtgattgtacctcttaatggaagacatggtgttatgctatggttcagaaattttgctatagcttcca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42610512 |
acatatgataaaggaattaaatcacctgatgcagtgattgtacctcttaatggaagacatggtgttatgttatggttcagaaattttgctatagcttcca |
42610611 |
T |
|
| Q |
117 |
tgatttcaaatctgattcctgaatatccttgaagcaatgtgttgattctaaccaacatgcctgctcttgtggctgtgggaggtaatgtctg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42610612 |
tgatttcaaatctgattcctgaatatccttgaagcaatgtgttgattctaaccaacatgcctgctcttgtggctgtgggaggtaatgtctg |
42610702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 40944200 - 40944117
Alignment:
| Q |
110 |
gcttccatgatttcaaatctgattcctgaatatccttgaagcaatgtgttgattctaaccaacatgcctgctcttgtggctgtg |
193 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| || | |||||||||||| || | |||| | |||||||| |||||| |
|
|
| T |
40944200 |
gcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcatggcagctcttgttgctgtg |
40944117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 40958165 - 40958089
Alignment:
| Q |
110 |
gcttccatgatttcaaatctgattcctgaatatccttgaagcaatgtgttgattctaaccaacatgcctgctcttgt |
186 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| ||||| || | |||||||||||| || | |||| |||||||||| |
|
|
| T |
40958165 |
gcttccaagatttcaaatctaattcctgaatagccttggaggagtgtgttgattctcactagcatggctgctcttgt |
40958089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 40548951 - 40548850
Alignment:
| Q |
73 |
acatggtgttatgctatggttcagaaattttgctatagcttccatgatttcaaatctgattcctgaatatccttgaagcaatgtgttgattctaaccaac |
172 |
Q |
| |
|
||||||||| ||| | ||||| |||| ||||| || ||||| | |||||| ||||||||||||| || |||||||| | |||||||||||| || ||| |
|
|
| T |
40548951 |
acatggtgtaatgttgtggttgagaagttttgtaatggcttctagcatttcatatctgattcctgagtagccttgaaggagtgtgttgattcttactaac |
40548852 |
T |
|
| Q |
173 |
at |
174 |
Q |
| |
|
|| |
|
|
| T |
40548851 |
at |
40548850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University