View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13054_high_3 (Length: 298)
Name: NF13054_high_3
Description: NF13054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13054_high_3 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 9586224 - 9586500
Alignment:
| Q |
9 |
agaagaaccataacaaacaacaaaaataacaacattatcattaagcctactaaaacaaatatcatttttaaatttaaataaatagttgtaaatttaacaa |
108 |
Q |
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| T |
9586224 |
agaagaaccataacaaacaacaaaaataacaacattatcattaagcctactaaaacaaatatcatctttaaatttaaataaatagttgtaaatttaacaa |
9586323 |
T |
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| Q |
109 |
tcaaacttcatgcatcgatttcccccc-tcaaccacattttgaggggggaaatccataaaacatcttcgaatttaaaggacaatattcataggatgctag |
207 |
Q |
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| T |
9586324 |
tcaaacttcatgcctctatttttgatcatcaaccacattttgagggggggaagccataaaacatcttcgaatttaaagcacaatattcataggatgctag |
9586423 |
T |
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| Q |
208 |
caaacaatgcatccttgacacgagaagagtttcttctttctgtcactcaaataatgctattatctttcttgaagatg |
284 |
Q |
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| T |
9586424 |
caaacaatgcatccttgacacgagaagggtttcttctttctgtcactcaaataatgctattatctttcttgaagatg |
9586500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 9580640 - 9580910
Alignment:
| Q |
9 |
agaagaaccataacaaacaacaaaaataacaacattatcattaagcctactaaaacaaatatcatttttaaatttaaataaatagttgtaaatttaacaa |
108 |
Q |
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| T |
9580640 |
agaagaaccataacaaacagcaaaaataacaaaattatcattaagcctactaaaacaaatatcatctttaaatttaaataaatagttataaatttaacaa |
9580739 |
T |
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| Q |
109 |
tcaaacttcatgc--atcgatttcccccctcaaccacattttgaggggg-gaaatccataaaacatcttcgaatttaaaggacaatattcataggatgct |
205 |
Q |
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| T |
9580740 |
tcaaacttcatgcctatatttttgagtcgtcaactacattttgagggggaaaaacccataaagcatcttagaattcaaagcatgatatttttaggatgct |
9580839 |
T |
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| Q |
206 |
agcaaacaatgcatccttgacacgagaagagtttcttctttctgtcactcaaataatgctattatctttct |
276 |
Q |
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| T |
9580840 |
agcaaacaatgcatccttgacacgagaagattttcttctttctgtcactcaaataatgctattatctttct |
9580910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 43633964 - 43634010
Alignment:
| Q |
213 |
aatgcatccttgacacgagaagagtttcttctttctgtcactcaaat |
259 |
Q |
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| T |
43633964 |
aatgcatccttgatgcaagaagagtttcttctttttgtcactcaaat |
43634010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 37932 - 37983
Alignment:
| Q |
12 |
agaaccataacaaacaacaaaaat-aacaacattatcattaagcctactaaa |
62 |
Q |
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| T |
37932 |
agaaccataacaaacaacaaaaatgaacaacattatcattaagcctcctaaa |
37983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 55505444 - 55505391
Alignment:
| Q |
206 |
agcaaacaatgcatccttgacacgagaagagtttcttctttctgtcactcaaat |
259 |
Q |
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| T |
55505444 |
agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaat |
55505391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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