View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13055_high_12 (Length: 433)
Name: NF13055_high_12
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 35245948 - 35246297
Alignment:
| Q |
13 |
attctcatcagaaaagcaacagaagaactttttattgatgtggggcataggatccagcaaaagtaattgactaatgacatgaaaattgatttaaagttct |
112 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| ||| |||||||||| ||||| |||||||||| | |||||||||||||||||||||||| |
|
|
| T |
35245948 |
attctcagaagaaaagcaacagaagaa------attgatgtagggaataggatccatcaaaattaattgactactcacatgaaaattgatttaaagttct |
35246041 |
T |
|
| Q |
113 |
cttagatgaagatcatgtaaaaccaattattggacattaacagatccgaaagacagactgctgcatcacaatgcatgaagttaaagaaaaagaacagaca |
212 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
35246042 |
cttagctgaagatcatgtaaagccaattattggacattgacagatccgaaagacagactgatgcatcacagttcatgaggttaaagaaaaagaacagaca |
35246141 |
T |
|
| Q |
213 |
tatagaataaggaacatattcaaaatcagaaaaatcaaagttggttttatttttt---aagtaaaaacactttggatacaaatggtcgaccctagattta |
309 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| |||||||| |||||||||| || ||||||||| |
|
|
| T |
35246142 |
tatagaataaggaacatattctaaatcagaaaaatcgaagttggttttattttttaagaagtaaaaatactttggagacaaatggtcaactctagattta |
35246241 |
T |
|
| Q |
310 |
tttgaaaatgaattacagaggaaatgctagaaaatggggaattgagtccacaacat |
365 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
35246242 |
tttgaaaatggattacagaggaaatgccagaaaatggggaattgagtacacaacat |
35246297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University