View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13055_high_17 (Length: 357)
Name: NF13055_high_17
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 26 - 349
Target Start/End: Complemental strand, 30952769 - 30952447
Alignment:
| Q |
26 |
aagttcttaattaagaatatttttacaaggtttggcacacctataactatcattagtaatgagggaactcacttttgtagcaaaatgtttgaagctgtgt |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| ||||||||||||||| |||||||||||||||| ||||| |
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| T |
30952769 |
aagttcttaattaagaatatttttacaaggtttggcacacctatatccatgattagtaatgggggaactcacttttgcagcaaaatgtttgaagttgtgt |
30952670 |
T |
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| Q |
126 |
tgaataaaaagctatcaaatagagagattaaaagaattttggaaaaagtgataaaacccttcaaggaaagatcggtctcttcaattatattatgccttat |
225 |
Q |
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|||||| | |||||||||||||||||||| ||| ||||||||||||||| || |||||||||| |||||||| ||||||||||||||||| |||| ||| |
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| T |
30952669 |
tgaatagagagctatcaaatagagagattgaaacaattttggaaaaagtaat-aaacccttcagggaaagattggtctcttcaattatatgatgctctat |
30952571 |
T |
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| Q |
226 |
tggcatacagggctgcatataaaacaccagttggaatatctccatacagaatggtatatggaaaatcttgtcatatagcaactgaattacaacacaaagc |
325 |
Q |
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|||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||||| ||| ||||||||||| ||||||||| |||||||||||| |
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| T |
30952570 |
gggcatatagggctgcatacaaaacaccacttggaatatctccatatagaatggtatatggcaaagcttgtcatataccaactgaatcacaacacaaagc |
30952471 |
T |
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| Q |
326 |
cctgttggctttaaagaaacttaa |
349 |
Q |
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| T |
30952470 |
cttgttggctctaaagaaacttaa |
30952447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 26 - 266
Target Start/End: Complemental strand, 30946822 - 30946583
Alignment:
| Q |
26 |
aagttcttaattaagaatatttttacaaggtttggcacacctataactatcattagtaatgagggaactcacttttgtagcaaaatgtttgaagctgtgt |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||| |||||||||| |
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| T |
30946822 |
aagttcttaattaagaatatttttacaaggtttggcacacctataactatcattagtaatgggtgaactgacttttgtagctaaatgttcgaagctgtgt |
30946723 |
T |
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| Q |
126 |
tgaataaaaagctatcaaatagagagattaaaagaattttggaaaaagtgataaaacccttcaaggaaagatcggtctcttcaattatattatgccttat |
225 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||| ||| |
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| T |
30946722 |
tgaatagagtgctatcaaatagagagattaaaagaattttggaaaaagtaat-aaacccttcaaggaaagattggtctcttcaattatatgatgatctat |
30946624 |
T |
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| Q |
226 |
tggcatacagggctgcatataaaacaccagttggaatatct |
266 |
Q |
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|||| | | ||||||||| ||||||||| ||||||||||| |
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| T |
30946623 |
gggcacataaggctgcatacaaaacaccacttggaatatct |
30946583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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