View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13055_high_22 (Length: 290)

Name: NF13055_high_22
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13055_high_22
NF13055_high_22
[»] chr3 (21 HSPs)
chr3 (1-241)||(2855764-2856004)
chr3 (6-275)||(2807177-2807446)
chr3 (1-241)||(2838554-2838794)
chr3 (4-260)||(5412811-5413067)
chr3 (14-240)||(2759159-2759385)
chr3 (1-241)||(2769013-2769253)
chr3 (1-241)||(2748939-2749179)
chr3 (6-241)||(2818501-2818736)
chr3 (1-243)||(2797303-2797545)
chr3 (61-243)||(2790309-2790491)
chr3 (42-103)||(21945671-21945732)
chr3 (42-103)||(22104770-22104831)
chr3 (42-103)||(22187035-22187096)
chr3 (42-98)||(21930473-21930529)
chr3 (42-98)||(22028052-22028108)
chr3 (42-98)||(22034569-22034625)
chr3 (42-97)||(22052786-22052841)
chr3 (11-98)||(22208072-22208159)
chr3 (34-92)||(22368262-22368320)
chr3 (46-95)||(22436996-22437045)
chr3 (42-98)||(22179469-22179525)
[»] scaffold0691 (1 HSPs)
scaffold0691 (6-241)||(6111-6346)
[»] chr8 (1 HSPs)
chr8 (42-103)||(27294595-27294656)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2855764 - 2856004
Alignment:
Q  1 gtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactg 100  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |||||||    
T  2855764 gtgatgcaagcacgacaatcaaagtttgttgttaccttttggctgtcaaaaattagcttggcaagagtagtttttcctataccccccattcccaccactg 2855863  T
Q  101 aaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattgttctttttggccttcaattcctacaatttctgtttcttcaatgaaaaggga 200  Q
    ||||||||  |||||||| |  ||| ||||||| |||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||||||||||||||    
T  2855864 aaatcactttgcgctcagatataccttccaataaccaaccagacaattcttcttttgggccttcaatgcctacaacttctgtttcttcaatgaaaaggga 2855963  T
Q  201 agacagtcgatgatcacgccatcttcctttttctgtctctc 241  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  2855964 agacagtcgaggatcacgccatcttccattttctgtctctc 2856004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 6 - 275
Target Start/End: Complemental strand, 2807446 - 2807177
Alignment:
Q  6 gcaagcacgacaatcaaagtttgccgttaccttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatc 105  Q
    |||||||||||||||||||| ||  |||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  2807446 gcaagcacgacaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatc 2807347  T
Q  106 actgcgcgctcagctgcaccatccaatagccaaccagacaattgttctttttggccttcaattcctacaatttctgtttcttcaatgaaaagggaagaca 205  Q
    || | |||||||||| |||| ||||||| |||| |||||| || |||| || ||  ||||| ||||||||||||| |||||||||| |||||||||||||    
T  2807346 accgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggaattcaaatcctacaatttctctttcttcaataaaaagggaagaca 2807247  T
Q  206 gtcgatgatcacgccatcttcctttttctgtctctctagtactatagctgcttgatgatcctcgttcatg 275  Q
    ||||| |||||||||||||||| ||||||||||||||||| || | || ||||||||||||| |||||||    
T  2807246 gtcgaggatcacgccatcttccattttctgtctctctagtgctgttgcggcttgatgatccttgttcatg 2807177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2838554 - 2838794
Alignment:
Q  1 gtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactg 100  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  2838554 gtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactg 2838653  T
Q  101 aaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattgttctttttggccttcaattcctacaatttctgtttcttcaatgaaaaggga 200  Q
    | || |||| ||||||||||||||| ||||||| ||||||| | | || |||| || ||||||||| |||||||||||||||||||||||||||||||||    
T  2838654 atatgactgtgcgctcagctgcaccctccaataaccaaccatatatttcttctcttgggccttcaaatcctacaatttctgtttcttcaatgaaaaggga 2838753  T
Q  201 agacagtcgatgatcacgccatcttcctttttctgtctctc 241  Q
    |||||||||| | ||  |||||||||| ||||||| |||||    
T  2838754 agacagtcgagggtcgtgccatcttccattttctgcctctc 2838794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 4 - 260
Target Start/End: Complemental strand, 5413067 - 5412811
Alignment:
Q  4 acgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaa 103  Q
    |||||||||| ||||||||||| ||| | |||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |    
T  5413067 acgcaagcacaacaatcaaagtgtgctgataccttttggctttcaaaaactagcttggcaagagtggtttttcctaggccccccattcctaccactgata 5412968  T
Q  104 tcactgcgcgctcagctgcaccatccaatagccaaccagacaattgttctttttggccttcaattcctacaatttctgtttcttcaatgaaaagggaaga 203  Q
    | ||||  || || |||||||||||||||| |||||||||||||| ||||||| | |||||||||||||||| ||||||||||  |||||| ||||||||    
T  5412967 tgactgtacgttccgctgcaccatccaataaccaaccagacaattcttcttttggaccttcaattcctacaacttctgtttctgtaatgaatagggaaga 5412868  T
Q  204 cagtcgatgatcacgccatcttcctttttctgtctctctagtactatagctgcttga 260  Q
    ||||||| |||| ||||||||||| ||||||||||||||| | || | |||||||||    
T  5412867 cagtcgaggatctcgccatcttccattttctgtctctctactgctgttgctgcttga 5412811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 2759385 - 2759159
Alignment:
Q  14 gacaatcaaagtttgccgttaccttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcg 113  Q
    |||||||||| | ||  |||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||| |||    
T  2759385 gacaatcaaactgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcg 2759286  T
Q  114 ctcagctgcaccatccaatagccaaccagacaattgttctttttggccttcaattcctacaatttctgtttcttcaatgaaaagggaagacagtcgatga 213  Q
     ||||||| ||| ||||||| ||||||| | | || ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  2759285 ttcagctgaaccctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagga 2759186  T
Q  214 tcacgccatcttcctttttctgtctct 240  Q
    |||||||||||||| |||||| |||||    
T  2759185 tcacgccatcttccattttctttctct 2759159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2769253 - 2769013
Alignment:
Q  1 gtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactg 100  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  2769253 gtgatgcaagcacgacaatcaaagtttgcagttaccttttggctgtcataaactagtttggcaagagtggtttttcctagaccccccattcctaccactg 2769154  T
Q  101 aaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattgttctttttggccttcaattcctacaatttctgtttcttcaatgaaaaggga 200  Q
    | ||||||| ||||| ||||||||| ||||||| ||||||| | |||| |||| || ||||||| | |||||||||||||||||||||||| || |||||    
T  2769153 atatcactgtgcgcttagctgcaccctccaataaccaaccaaataattcttctcttgggccttccaatcctacaatttctgtttcttcaataaagaggga 2769054  T
Q  201 agacagtcgatgatcacgccatcttcctttttctgtctctc 241  Q
    |||||  ||| ||||||||||||||||  |||||| |||||    
T  2769053 agacatccgaggatcacgccatcttccactttctgactctc 2769013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2749179 - 2748939
Alignment:
Q  1 gtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactg 100  Q
    ||||||||||||||||||||||||| ||| | |||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |    
T  2749179 gtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacgg 2749080  T
Q  101 aaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattgttctttttggccttcaattcctacaatttctgtttcttcaatgaaaaggga 200  Q
    | ||||| | |||||||||| |||||||||||| ||||||||||| || ||||||| || ||||||| || |||| ||||||||||||||| ||||| ||    
T  2749079 atatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttgggacttcaataccaacaacttctgtttcttcaataaaaagaga 2748980  T
Q  201 agacagtcgatgatcacgccatcttcctttttctgtctctc 241  Q
    |||||||||| ||||| ||||| |||| |||||| ||||||    
T  2748979 agacagtcgaggatcatgccattttccattttctctctctc 2748939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 2818736 - 2818501
Alignment:
Q  6 gcaagcacgacaatcaaagtttgccgttaccttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatc 105  Q
    |||||| ||||||||||| | ||  |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||    
T  2818736 gcaagctcgacaatcaaactgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatc 2818637  T
Q  106 actgcgcgctcagctgcaccatccaatagccaaccagacaattgttctttttggccttcaattcctacaatttctgtttcttcaatgaaaagggaagaca 205  Q
    |||| |||||| |||||||| ||||||| ||||||| | | || |||| |  ||||||||| |||||| ||||||||||||||||||||||| |||||||    
T  2818636 actgtgcgctcggctgcaccctccaataaccaaccatatagttcttctctcgggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagaca 2818537  T
Q  206 gtcgatgatcacgccatcttcctttttctgtctctc 241  Q
    ||||| |||||||||||| |||| | |||| |||||    
T  2818536 gtcgaggatcacgccatcctcctgtgtctgactctc 2818501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 2797545 - 2797303
Alignment:
Q  1 gtgacgcaagcacgacaatcaaagtttgccgttaccttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactg 100  Q
    |||| |||||||||||||||||| ||||  ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  2797545 gtgatgcaagcacgacaatcaaattttgttgttaccttttgactgtcgaaaactagcttggcaagagtggtttttcctagacctcccattccaaccactg 2797446  T
Q  101 aaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattgttctttttggccttcaattcctacaatttctgtttcttcaatgaaaaggga 200  Q
    ||||||||| |||||||||||  || || | || |||||||||||||| |||  |  ||||||||| ||| |||||| | ||||||||||| ||||||||    
T  2797445 aaatcactgtgcgctcagctgtgccctctagtaaccaaccagacaattcttccctcgggccttcaaatccgacaattgcagtttcttcaataaaaaggga 2797346  T
Q  201 agacagtcgatgatcacgccatcttcctttttctgtctctcta 243  Q
    |||||||||| |||||| ||||||||  || || |||||||||    
T  2797345 agacagtcgaggatcacaccatcttctattatccgtctctcta 2797303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 61 - 243
Target Start/End: Complemental strand, 2790491 - 2790309
Alignment:
Q  61 gcaagagtagtttttcctagacctcccattcctaccactgaaatcactgcgcgctcagctgcaccatccaatagccaaccagacaattgttctttttggc 160  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||  || ||||||| |||||||||||||| |||  |  |||    
T  2790491 gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttccctcgggc 2790392  T
Q  161 cttcaattcctacaatttctgtttcttcaatgaaaagggaagacagtcgatgatcacgccatcttcctttttctgtctctcta 243  Q
    |||||| ||| |||||| | |||||||||||||||||||||||||  ||| ||||| |||||||||  || || |||||||||    
T  2790391 cttcaaatccgacaattgcagtttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctcta 2790309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 21945732 - 21945671
Alignment:
Q  42 gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaa 103  Q
    |||||||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| ||||    
T  21945732 gctgtcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccacggaaa 21945671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 22104831 - 22104770
Alignment:
Q  42 gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaa 103  Q
    |||||||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| ||||    
T  22104831 gctgtcaaaaactctcttggctagagttgtttttccttgccctcccattcctaccaccgaaa 22104770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 22187096 - 22187035
Alignment:
Q  42 gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaa 103  Q
    |||||||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| ||||    
T  22187096 gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaaa 22187035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 21930529 - 21930473
Alignment:
Q  42 gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccac 98  Q
    |||||||||||||  |||||| ||||| ||||||||| | |||||||||||||||||    
T  21930529 gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccac 21930473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 22028108 - 22028052
Alignment:
Q  42 gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccac 98  Q
    |||||||||||||  |||||| ||||| ||||||||| | |||||||||||||||||    
T  22028108 gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccac 22028052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 22034625 - 22034569
Alignment:
Q  42 gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccac 98  Q
    |||||||||||||  |||||| ||||| ||||||||| | |||||||||||||||||    
T  22034625 gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccac 22034569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 22052841 - 22052786
Alignment:
Q  42 gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctacca 97  Q
    |||||||||||||  |||||| ||||| ||||||||| | ||||||||||||||||    
T  22052841 gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctacca 22052786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 22208159 - 22208072
Alignment:
Q  11 cacgacaatcaaagtttgccgttaccttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccac 98  Q
    ||||||||||||||| | |  | |||| || ||||||||||||| ||||||||||||| ||||| ||| | |||||||| || |||||    
T  22208159 cacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccac 22208072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 22368262 - 22368320
Alignment:
Q  34 accttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcc 92  Q
    ||||||||| |||||||||||  |||||| ||||| |||||||| || |||||||||||    
T  22368262 accttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattcc 22368320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 22436996 - 22437045
Alignment:
Q  46 tcaaaaactagcttggcaagagtagtttttcctagacctcccattcctac 95  Q
    |||||||||  |||||| ||||||||||||||| | ||||||||||||||    
T  22436996 tcaaaaactttcttggccagagtagtttttccttgccctcccattcctac 22437045  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 22179525 - 22179469
Alignment:
Q  42 gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccac 98  Q
    |||||||||||||  |||||| ||||| ||||||||| | ||||||||||| |||||    
T  22179525 gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcccaccac 22179469  T

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Target: scaffold0691 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 6111 - 6346
Alignment:
Q  6 gcaagcacgacaatcaaagtttgccgttaccttttggctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaatc 105  Q
    |||||||||||||||||| | ||  |||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||     
T  6111 gcaagcacgacaatcaaattgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaatt 6210  T
Q  106 actgcgcgctcagctgcaccatccaatagccaaccagacaattgttctttttggccttcaattcctacaatttctgtttcttcaatgaaaagggaagaca 205  Q
    || | ||||||||||| ||  ||||||| ||||||| | ||||  ||| || ||||||| | |||||||| ||| ||||||||||| ||||||| ||| |    
T  6211 acggtgcgctcagctggactctccaataaccaaccatataattcctctcttgggccttcgaatcctacaacttcagtttcttcaataaaaagggcagata 6310  T
Q  206 gtcgatgatcacgccatcttcctttttctgtctctc 241  Q
     |||| |||||||||||||||| ||||||| |||||    
T  6311 atcgaggatcacgccatcttccattttctgcctctc 6346  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 27294656 - 27294595
Alignment:
Q  42 gctgtcaaaaactagcttggcaagagtagtttttcctagacctcccattcctaccactgaaa 103  Q
    |||||||||||||  |||| | ||||| ||||||||| | ||||||||||||||||| ||||    
T  27294656 gctgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcctaccacagaaa 27294595  T

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