View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13055_high_5 (Length: 596)
Name: NF13055_high_5
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_high_5 |
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| [»] scaffold0471 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 1889771 - 1890186
Alignment:
| Q |
18 |
ctagatggtacattgttacgtggtttggttgctactttactggactaaacaacatgcttgca-gaggctatacaaattggatgtattcaagtagagttga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
1889771 |
ctagatggtacattgttacgtggtttggttgctacttaactggactaaacaacatgcttgtaagaggctatacaaattggatgtattcaagtagagttga |
1889870 |
T |
|
| Q |
117 |
taattatatagttggtagggatagaaggaaaaggttctcaattttgttgttagaaatttgagatggatattaatctgtagtgattatgtggaacatactt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1889871 |
taattatatagttggtagggatagaaggaaaaggttctcaattttgttgttataaatttgagatggatattaatctgtagtgattatgtggaacatactt |
1889970 |
T |
|
| Q |
217 |
gcatatgcaggtgagttatctatcggattttctttttcttcagaatatttaggtacttctctgaaaggagacgnnnnnnncaaaagatagaattgtctct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||| |
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| T |
1889971 |
gcatatgcaggtgagttatctatcggattttctttttcttcagaatttttaagtacttctctgaaaggtgacgttttttt-aaaagatagaattgtctct |
1890069 |
T |
|
| Q |
317 |
gaaaggatccattgaaaggagacgttaagcttgtccgagaagagagtcagattctaagttttgttttcgcctgcgacttgatcatgacagtaactaataa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1890070 |
gaaaggatccattgaaaggagacgttaagcttgtccaagaagagagtcacattctaagttttgttttcgcctgcgacttcatcatgacagtaactaataa |
1890169 |
T |
|
| Q |
417 |
aatctcagatgtttatt |
433 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
1890170 |
aatctcatatgtttatt |
1890186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 1666463 - 1666241
Alignment:
| Q |
18 |
ctagatggtacattgttacgtggtttggttgctactttactggactaaacaacatgcttgca-gaggctatacaaattggatgtattcaagtagagttga |
116 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
1666463 |
ctagatggtacattggtacgtggtttggttgctacttaactggactaaacaacatgcttgtaagaggctatacaaattggatgtattcaagtagagttga |
1666364 |
T |
|
| Q |
117 |
taattatatagttggtagggatagaaggaaaaggttctcaattttgttgttagaaatttgagatggatattaatctgtagtgattatgtggaacatactt |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1666363 |
taattatatagttggtagggatagaaggaaaaggttctcaattttgttgttagaaattagagatggatattaatctgtagtgattatgtggaacatactt |
1666264 |
T |
|
| Q |
217 |
gcatatgcaggtgagttatctat |
239 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
1666263 |
gcatatgcaggtgagttatctat |
1666241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 1892864 - 1892989
Alignment:
| Q |
37 |
gtggtttggttgctactttactggactaaacaacatgcttgca-gaggctatacaaattggatgtattcaagtagagttgataattatatagttggtagg |
135 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||| | ||||||||||||||| ||||| ||||||| ||||||||||||||||| ||| ||| |
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|
| T |
1892864 |
gtggtttgggtgctacttaactggactaaacaacatgcttgtaagaggctatacaaatttgatgttgtcaagtatagttgataattatatagatggaagg |
1892963 |
T |
|
| Q |
136 |
gatagaaggaaaaggttctcaatttt |
161 |
Q |
| |
|
||| || |||||| |||||||||||| |
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|
| T |
1892964 |
gatggagggaaaaagttctcaatttt |
1892989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 522
Target Start/End: Original strand, 33842234 - 33842296
Alignment:
| Q |
461 |
actcaacacacgaaa-gccacacgacatgttgaacagcacccaattcactttattaatggatt |
522 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| || ||||||| ||| |||||||||||||||| |
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|
| T |
33842234 |
actcaacacacgaaaagccgcacgacatgttcaatagcaccctatttactttattaatggatt |
33842296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 36104391 - 36104449
Alignment:
| Q |
436 |
tgagcgctgctatacaacacgacaaactcaacacacg-aaagccacacgacatgttgaa |
493 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||| |||||| |||||||||||||| |
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|
| T |
36104391 |
tgagcgctgctatacagcacgacagactctacacacgaaaagccgcacgacatgttgaa |
36104449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 522
Target Start/End: Complemental strand, 6402744 - 6402682
Alignment:
| Q |
461 |
actcaacacacgaaa-gccacacgacatgttgaacagcacccaattcactttattaatggatt |
522 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||| || ||||||| ||| |||||||||||||||| |
|
|
| T |
6402744 |
actcaacacatgaaaagccgcacgacatgttcaatagcaccctatttactttattaatggatt |
6402682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 5999420 - 5999562
Alignment:
| Q |
79 |
agaggctatacaaattggatgtattcaagtagagttgataattatat--agttggtagggatagaaggaaaaggttctcaattttgttgttagaaatttg |
176 |
Q |
| |
|
||||||||||||||| |||||| | |||| |||||| |||| |||| | ||| |||||| |||||||||| |||||||||||||||| |||||||| |
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| T |
5999420 |
agaggctatacaaatcggatgt-tgcaagcagagtttataacaatatgaatatggaagggatggaaggaaaagtttctcaattttgttgtccgaaatttg |
5999518 |
T |
|
| Q |
177 |
agatggatattaatctgtagtgattatgtggaacatacttgcat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
5999519 |
agatggatattaatctgtagtgattatgttgaacatacttgcat |
5999562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 42444330 - 42444272
Alignment:
| Q |
436 |
tgagcgctgctatacaacacgacaaactcaacacacg-aaagccacacgacatgttgaa |
493 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||| |||||| |||||||||||||| |
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|
| T |
42444330 |
tgagcgctgctatacagcacgacagactctacacacgaaaagccgcacgacatgttgaa |
42444272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 437 - 527
Target Start/End: Complemental strand, 14526124 - 14526034
Alignment:
| Q |
437 |
gagcgctgctatacaacacgacaaactcaacacacgaaagccacacgacatgttgaacagcacccaattcactttattaatggattgcttt |
527 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| |||| |
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|
| T |
14526124 |
gagcgctgttatacagcacgacaaattcaacacacgaaaaccacacgacatgttcaacagcacgcaattcactttattaatggatttcttt |
14526034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 438 - 527
Target Start/End: Complemental strand, 48583989 - 48583900
Alignment:
| Q |
438 |
agcgctgctatacaacacgacaaactcaacacacgaaagccacacgacatgttgaacagcacccaattcactttattaatggattgcttt |
527 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||| |||| |
|
|
| T |
48583989 |
agcgctgctatacagcacgacaaaatcaacacacgaaagccacacaacatgttgaacaacacttaattcactttataaatggatttcttt |
48583900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 446 - 502
Target Start/End: Original strand, 2358812 - 2358869
Alignment:
| Q |
446 |
tatacaacacgacaaactc-aacacacgaaagccacacgacatgttgaacagcaccca |
502 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || ||||||||||||| |||||| |
|
|
| T |
2358812 |
tatacaacacgacaaactctaacacacgaaagccgcaggacatgttgaacatcaccca |
2358869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 478 - 527
Target Start/End: Original strand, 6019874 - 6019923
Alignment:
| Q |
478 |
cacacgacatgttgaacagcacccaattcactttattaatggattgcttt |
527 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
6019874 |
cacacgacatgttgaacaacacccaattcactttataaatggatttcttt |
6019923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 437 - 527
Target Start/End: Original strand, 41312898 - 41312988
Alignment:
| Q |
437 |
gagcgctgctatacaacacgacaaactcaacacacgaaagccacacgacatgttgaacagcacccaattcactttattaatggattgcttt |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||| | |||||||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
41312898 |
gagcgctgctatacaacacgacaaactcaacacacgaatgctacataagttgttgaacgacacccaattcactttattaatagatttcttt |
41312988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 489
Target Start/End: Complemental strand, 21032002 - 21031959
Alignment:
| Q |
446 |
tatacaacacgacaaactcaacacacgaaagccacacgacatgt |
489 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
21032002 |
tatacaacacgaacaacttaacacacgaaagccacacgacatgt |
21031959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0471 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0471
Description:
Target: scaffold0471; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 2506 - 2564
Alignment:
| Q |
436 |
tgagcgctgctatacaacacgacaaactcaacacacg-aaagccacacgacatgttgaa |
493 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||| |||||| |||||||||||||| |
|
|
| T |
2506 |
tgagcgctgctatacagcacgacagactctacacacgaaaagccgcacgacatgttgaa |
2564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 522
Target Start/End: Original strand, 11021566 - 11021628
Alignment:
| Q |
461 |
actcaacacacgaaa-gccacacgacatgttgaacagcacccaattcactttattaatggatt |
522 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| || ||||||| ||| |||||||||||||||| |
|
|
| T |
11021566 |
actcaacacacgaaaagccgcacgacatgttcaatagcaccctatttactttattaatggatt |
11021628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 522
Target Start/End: Complemental strand, 102901 - 102839
Alignment:
| Q |
461 |
actcaacacacgaaa-gccacacgacatgttgaacagcacccaattcactttattaatggatt |
522 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| || |||||| ||| |||||||||||||||| |
|
|
| T |
102901 |
actcaacacacgaaaagccgcacgacatgttcaatagcaccatatttactttattaatggatt |
102839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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