View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13055_low_1 (Length: 928)

Name: NF13055_low_1
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13055_low_1
NF13055_low_1
[»] chr2 (16 HSPs)
chr2 (22-370)||(17689466-17689814)
chr2 (35-248)||(7300268-7300480)
chr2 (166-252)||(37308413-37308499)
chr2 (142-231)||(44941258-44941347)
chr2 (18-134)||(19469207-19469323)
chr2 (58-125)||(32624072-32624139)
chr2 (18-125)||(40110063-40110170)
chr2 (58-227)||(11195962-11196131)
chr2 (58-125)||(144384-144451)
chr2 (307-362)||(32623836-32623890)
chr2 (43-105)||(9005569-9005631)
chr2 (39-125)||(18634678-18634764)
chr2 (144-248)||(6823004-6823108)
chr2 (444-503)||(5609207-5609266)
chr2 (166-248)||(31265815-31265897)
chr2 (148-225)||(1159397-1159474)
[»] chr5 (13 HSPs)
chr5 (18-370)||(475681-476033)
chr5 (42-125)||(379626-379709)
chr5 (148-248)||(5909513-5909613)
chr5 (58-125)||(5099997-5100064)
chr5 (307-362)||(35100982-35101036)
chr5 (40-118)||(17431232-17431310)
chr5 (36-125)||(16906998-16907087)
chr5 (307-362)||(979698-979752)
chr5 (445-496)||(27771336-27771387)
chr5 (70-105)||(29488625-29488660)
chr5 (170-248)||(27679669-27679747)
chr5 (68-234)||(41612304-41612470)
chr5 (40-105)||(34369598-34369663)
[»] chr6 (14 HSPs)
chr6 (18-370)||(2364573-2364925)
chr6 (18-369)||(22531987-22532337)
chr6 (392-503)||(3500745-3500856)
chr6 (61-125)||(26513437-26513501)
chr6 (52-224)||(2710068-2710240)
chr6 (167-251)||(14586076-14586160)
chr6 (42-134)||(25349927-25350019)
chr6 (58-125)||(14687368-14687435)
chr6 (148-227)||(31706382-31706461)
chr6 (166-248)||(6936982-6937064)
chr6 (18-48)||(14844457-14844487)
chr6 (148-234)||(27580599-27580685)
chr6 (190-248)||(33095561-33095619)
chr6 (308-361)||(14497616-14497669)
[»] chr1 (13 HSPs)
chr1 (18-369)||(3545421-3545772)
chr1 (53-369)||(34824833-34825148)
chr1 (18-370)||(49458198-49458550)
chr1 (17-369)||(1248905-1249255)
chr1 (58-227)||(13868175-13868344)
chr1 (61-215)||(26510719-26510873)
chr1 (58-227)||(33150606-33150775)
chr1 (58-207)||(5808387-5808536)
chr1 (58-227)||(45795042-45795211)
chr1 (166-248)||(38204335-38204417)
chr1 (307-369)||(44762003-44762065)
chr1 (148-225)||(5287612-5287689)
chr1 (192-229)||(36379663-36379700)
[»] chr3 (16 HSPs)
chr3 (31-369)||(11237274-11237613)
chr3 (19-370)||(31674397-31674749)
chr3 (19-295)||(31921671-31921947)
chr3 (271-370)||(29830923-29831022)
chr3 (42-225)||(34829032-34829215)
chr3 (58-227)||(20857567-20857736)
chr3 (42-227)||(40514050-40514235)
chr3 (42-125)||(35216245-35216328)
chr3 (58-126)||(20857940-20858008)
chr3 (42-134)||(53941023-53941115)
chr3 (67-225)||(21399996-21400154)
chr3 (148-225)||(7935555-7935632)
chr3 (332-369)||(39738716-39738753)
chr3 (317-366)||(52735042-52735091)
chr3 (74-125)||(36624189-36624240)
chr3 (67-225)||(47748776-47748934)
[»] chr8 (8 HSPs)
chr8 (18-370)||(6985053-6985409)
chr8 (33-370)||(3938682-3939020)
chr8 (267-370)||(40822295-40822398)
chr8 (58-227)||(9510407-9510576)
chr8 (40-134)||(25192793-25192887)
chr8 (18-124)||(39432465-39432571)
chr8 (58-224)||(6244763-6244929)
chr8 (61-123)||(25900749-25900811)
[»] scaffold0555 (1 HSPs)
scaffold0555 (18-369)||(7137-7488)
[»] chr7 (9 HSPs)
chr7 (392-503)||(27324511-27324622)
chr7 (61-224)||(38488841-38489004)
chr7 (58-227)||(35213244-35213413)
chr7 (144-248)||(27724550-27724654)
chr7 (148-248)||(30802224-30802324)
chr7 (58-125)||(26855426-26855493)
chr7 (168-248)||(19512008-19512088)
chr7 (148-225)||(27096755-27096832)
chr7 (148-225)||(27181471-27181548)
[»] chr4 (12 HSPs)
chr4 (392-503)||(28359306-28359417)
chr4 (273-370)||(6874654-6874751)
chr4 (58-224)||(43517090-43517256)
chr4 (58-227)||(20543696-20543865)
chr4 (40-123)||(19119792-19119875)
chr4 (148-248)||(32348758-32348858)
chr4 (143-223)||(27299781-27299861)
chr4 (80-248)||(41879422-41879590)
chr4 (307-362)||(20543561-20543615)
chr4 (451-493)||(50344859-50344901)
chr4 (148-225)||(52814100-52814177)
chr4 (163-248)||(56337963-56338048)
[»] scaffold0048 (2 HSPs)
scaffold0048 (154-252)||(64205-64303)
scaffold0048 (190-231)||(50946-50987)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 22 - 370
Target Start/End: Complemental strand, 17689814 - 17689466
Alignment:
Q  22 ggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataataccc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17689814 ggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataataccc 17689715  T
Q  122 aaacatccattgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17689714 aaacatccattgaaggcttatcagaaaaagtaaaattacactctttatggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtg 17689615  T
Q  222 gtcggatcctatgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagtacatcttgta 321  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17689614 gtcggatcctatgctttgtttaggtatcgacgcacccggtttattgtaattactacatttgtttgactctttgaggggtgacttcttagtacatcttgta 17689515  T
Q  322 cttaggaggttttaccgcctttgttaatatattccatttttgtttcttc 370  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17689514 cttaggaggttttaccgcctttgttaatatataccatttttgtttcttc 17689466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 35 - 248
Target Start/End: Complemental strand, 7300480 - 7300268
Alignment:
Q  35 cgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattga 134  Q
    ||||| |||| ||||| ||||| |||||| |||||||||| |||||||||||||||||| |||||||| |||| |||||||| | ||||||  |||||||    
T  7300480 cgcgtcgatcttttcttcagcttatttggctactttgtgtctggatggtttggaatgaatgcaacaacggactatttaataacatccaaacccccattga 7300381  T
Q  135 a-ggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctat 233  Q
    |   || || |||||| || ||||| ||||| |||| |||||| ||||| | | | ||||| ||||||| ||||| |||||| ||||||||||| ||| |    
T  7300380 acaactcat-agaaaaggttaaatttcactcgttttagtggcttaaagccaat-atgccacgtttgtgtgcggttgtcaaagatggtggtcggacccttt 7300283  T
Q  234 gctttgtttaggtat 248  Q
    | | ||||| |||||    
T  7300282 gttatgtttgggtat 7300268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 37308413 - 37308499
Alignment:
Q  166 ttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtattgac 252  Q
    ||||||||| ||||||||| ||| ||||| ||||||||||||||||| || |||| |||||||| | |||||||| | |||||||||    
T  37308413 ttttggtggttaaaagctaataacgccacgtttgtgtacggttctcagagatggtagtcggatcatttgctttgtatgggtattgac 37308499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 44941258 - 44941347
Alignment:
Q  142 tcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcct 231  Q
    ||||| |||||||| || || || |||||||||||||||||||  || | |||||||||||||||||| || || |||||||||||||||    
T  44941258 tcagataaagtaaagtttcattcgttttggtggctaaaagctaacaatgtcacatttgtgtacggttcacagagatggtggtcggatcct 44941347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 19469207 - 19469323
Alignment:
Q  18 tacaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataat 117  Q
    |||||||||  |||||  ||| ||||||||||| |||||  | |||||||| ||||| ||| | |||||||||||||||||||| ||| | |||||||||    
T  19469207 tacaggtcacccgaggaagcgcagatcctttcttcagctgttgtggttactctgtgtctgggtagtttggaatgaacgcaacaatagaatatttaataat 19469306  T
Q  118 acccaaacatccattga 134  Q
    | ||||||  |||||||    
T  19469307 atccaaactaccattga 19469323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 32624139 - 32624072
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 125  Q
    ||||||||||||||||| ||| |||||||||| ||||| || || |||||||||||||||| ||||||    
T  32624139 atttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 32624072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 40110170 - 40110063
Alignment:
Q  18 tacaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataat 117  Q
    |||||||||  |||||  ||| ||||||||||| |||||  | |||||||||||||| ||| | |||||||||||||| ||||| ||| | |||||||||    
T  40110170 tacaggtcactcgaggaagcgcagatcctttcttcagctgttgtggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaataat 40110071  T
Q  118 acccaaac 125  Q
    | ||||||    
T  40110070 atccaaac 40110063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 11196131 - 11195962
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaat 157  Q
    ||||||||||||| | | ||| |||||||||||||||| || || |  |||| |||||| | ||||||  || |||||    || |||| ||||||||||    
T  11196131 atttggttactttttatttggttggtttggaatgaacgtaataatatgctttataataacatccaaaccaccgttgaacaactagcagataaagtaaaat 11196032  T
Q  158 tacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 227  Q
    | |||||||| |||||||| |||||||  |||| ||  ||| ||| |||| ||||||| |||||||||||    
T  11196031 ttcactctttatggtggcttaaagctaacaaagtcaattttatgttcggtactcaaagatggtggtcgga 11195962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 144384 - 144451
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 125  Q
    ||||||||||||||||| ||| |||||||||| ||||| || || || ||||||||||||| ||||||    
T  144384 atttggttactttgtgtttgggtggtttggaacgaacgtaataataggctttttaataatatccaaac 144451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 307 - 362
Target Start/End: Complemental strand, 32623890 - 32623836
Alignment:
Q  307 ttagtacatcttgtacttaggaggttttaccgcctttgttaatatattccattttt 362  Q
    ||||||||||||||||||||| | |||||| ||| |||||||||||||||||||||    
T  32623890 ttagtacatcttgtacttaggtg-ttttactgccgttgttaatatattccattttt 32623836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 9005631 - 9005569
Alignment:
Q  43 tcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacaga 105  Q
    |||||||| |||||||| |||||||||||||  ||| ||||||||||||| || |||||||||    
T  9005631 tcctttcttcagctcatctggttactttgtgcttgggtggtttggaatgatcgtaacaacaga 9005569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 18634764 - 18634678
Alignment:
Q  39 tagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 125  Q
    |||||| ||||| |||||||||| |||||||||| | || ||||||||||||||||| || |||| | | |||||||| | ||||||    
T  18634764 tagatcatttcttcagctcatttcgttactttgtttctgtatggtttggaatgaacgtaataacaaaatatttaataacatccaaac 18634678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 6823108 - 6823004
Alignment:
Q  144 agaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgttta 243  Q
    |||||||| |||||  || || || |||||| ||||||||| |||  |||  |||||||||||||||||||| ||||||||| | ||| | ||||||||     
T  6823108 agaaaaagcaaaatatcattcgttatggtggttaaaagctaataacaccaattttgtgtacggttctcaaagatggtggtcgaaccctttactttgtttg 6823009  T
Q  244 ggtat 248  Q
    |||||    
T  6823008 ggtat 6823004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 503
Target Start/End: Original strand, 5609207 - 5609266
Alignment:
Q  444 aatgataattttggtattatgaataaattttaattaaatttggatgtaacttgatatttt 503  Q
    ||||| |||||  ||||||| |||||||||||||||| ||||||||||||  ||||||||    
T  5609207 aatgacaatttcagtattattaataaattttaattaactttggatgtaacaagatatttt 5609266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 31265897 - 31265815
Alignment:
Q  166 ttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtat 248  Q
    |||| |||||||||||||  |||  |||| |||||||| | ||||||||| ||||||||||| ||| | |||||||| |||||    
T  31265897 ttttagtggctaaaagctcataataccacttttgtgtatgattctcaaagatggtggtcggaccctttactttgtttgggtat 31265815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 1159397 - 1159474
Alignment:
Q  148 aaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcg 225  Q
    ||||| ||||| || || || |||||||| |||||||  ||| |||| |||||||||||||||||||  |||||||||    
T  1159397 aaagttaaatttcattcgttgtggtggcttaaagctaaaaaaaccacttttgtgtacggttctcaaaattggtggtcg 1159474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 476033 - 475681
Alignment:
Q  18 tacaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataat 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476033 tacaggtcatacgagggcgcgtagatcctttatgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataat 475934  T
Q  118 acccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  475933 acccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttatggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggt 475834  T
Q  218 ggtggtcggatcctatgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagtacatct 317  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  475833 ggtggtcggatcctatgctttgtttaggtatcgacgcacccggtttattgtaattactacatttgtttgactctttgaagggtgacttcttagtacatct 475734  T
Q  318 tgtacttaggaggttttaccgcctttgttaatatattccatttttgtttcttc 370  Q
    ||||||||||| ||||||||  |||||||||||||| ||||||||||||||||    
T  475733 tgtacttaggaagttttaccatctttgttaatatataccatttttgtttcttc 475681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 379709 - 379626
Alignment:
Q  42 atcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 125  Q
    ||||||||| |||||||||||||||||| |||| |||||||| |||||||  || ||||| ||| | |||||||||||||||||    
T  379709 atcctttctccagctcatttggttacttggtgtctggatggtctggaatgctcgtaacaatagaatatttaataatacccaaac 379626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 5909513 - 5909613
Alignment:
Q  148 aaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggta 247  Q
    ||||||||||| ||||| | ||||||||| ||||| | ||| ||||| |||||||||| |||||| || ||||||||||| ||| || ||||||| ||||    
T  5909513 aaagtaaaatttcactcgtattggtggctgaaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccctttgatttgtttgggta 5909612  T
Q  248 t 248  Q
    |    
T  5909613 t 5909613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 5099997 - 5100064
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 125  Q
    ||||||||||||||||| ||| |||||||||| ||||| || || || ||||||||||||| ||||||    
T  5099997 atttggttactttgtgtttgggtggtttggaacgaacgtaataataggctttttaataatatccaaac 5100064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 307 - 362
Target Start/End: Complemental strand, 35101036 - 35100982
Alignment:
Q  307 ttagtacatcttgtacttaggaggttttaccgcctttgttaatatattccattttt 362  Q
    ||||||||||||||||||||| | ||| |||||| |||||||||||||||||||||    
T  35101036 ttagtacatcttgtacttaggtg-tttcaccgccgttgttaatatattccattttt 35100982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 17431310 - 17431232
Alignment:
Q  40 agatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataata 118  Q
    ||||||||||| |||||  | |||||||||||||| ||| | |||||||||||||| ||||| ||| | ||||||||||    
T  17431310 agatcctttcttcagctgttgtggttactttgtgtctggttagtttggaatgaacgtaacaatagaatatttaataata 17431232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 16907087 - 16906998
Alignment:
Q  36 gcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 125  Q
    ||||| ||| ||||| |||||||| |||||||||||||| || ||||| ||||||||||| || |||| | | |||| ||||| ||||||    
T  16907087 gcgtacatcttttcttcagctcatatggttactttgtgtctgaatggtatggaatgaacgtaataacaaaatatttagtaatatccaaac 16906998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 979698 - 979752
Alignment:
Q  307 ttagtacatcttgtacttaggaggttttaccgcctttgttaatatattccattttt 362  Q
    |||||||||||||||||||| | |||| || ||| |||||||||||||||||||||    
T  979698 ttagtacatcttgtacttag-atgtttcactgccattgttaatatattccattttt 979752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 496
Target Start/End: Original strand, 27771336 - 27771387
Alignment:
Q  445 atgataattttggtattatgaataaattttaattaaatttggatgtaacttg 496  Q
    |||| ||||||||||||||   |||||||||| |||||||||||||||||||    
T  27771336 atgacaattttggtattattgttaaattttaaataaatttggatgtaacttg 27771387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 29488625 - 29488660
Alignment:
Q  70 tgtgtgtggatggtttggaatgaacgcaacaacaga 105  Q
    ||||||||||| ||||||||||||||||||||||||    
T  29488625 tgtgtgtggatagtttggaatgaacgcaacaacaga 29488660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 27679669 - 27679747
Alignment:
Q  170 ggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtat 248  Q
    ||||||| || |||| ||| | ||| ||||||||||||||||| |  ||||||||||| |||||||| ||||| |||||    
T  27679669 ggtggcttaaggctaataatgtcacttttgtgtacggttctcagaaatggtggtcggaccctatgctatgtttgggtat 27679747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 41612470 - 41612304
Alignment:
Q  68 tttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaattacactcttt 167  Q
    ||||||| ||| | |||||||||||||| ||||| ||| | |||||||||| ||||||  |||||||    |||| ||||||  | ||||| || |||||    
T  41612470 tttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaataatatccaaactaccattgatcaattattagaaaagattaaattccattcttt 41612371  T
Q  168 ttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatg 234  Q
     |||||| || | |||| ||| |||   |||||| ||||  |||||| |||||||||||| ||||||    
T  41612370 atggtggttacaggctaataatgccttgtttgtgcacggcactcaaatgtggtggtcggaccctatg 41612304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 34369598 - 34369663
Alignment:
Q  40 agatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacaga 105  Q
    |||||||| || ||||| ||||| ||||||||||| ||| | |||||||||||||| || ||||||    
T  34369598 agatccttcctccagcttatttgattactttgtgtttggttcgtttggaatgaacggaataacaga 34369663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 2364925 - 2364573
Alignment:
Q  18 tacaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataat 117  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2364925 tacaggtcatacgaggacgcgtagatcctttatgcagctcatttggttactttgtgtgtggatggtttgaaatgaacgcaacaacagactttttaataat 2364826  T
Q  118 acccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggt 217  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2364825 acccaaacatccattgaaggcttatgagaaaaagtaaaattacactctttatggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggt 2364726  T
Q  218 ggtggtcggatcctatgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagtacatct 317  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||    
T  2364725 ggtggtcggatcctatgctttgtttaggtatcgacgcacccggtttattgtaataattacatttgtttgactctttgaggggtgacttcttagtacatct 2364626  T
Q  318 tgtacttaggaggttttaccgcctttgttaatatattccatttttgtttcttc 370  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2364625 tgtacttaggaggttttaccgcctttgttaatatataccatttttgtttcttc 2364573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 22532337 - 22531987
Alignment:
Q  18 tacaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataat 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22532337 tacaggtcatacgagggcgcgtagatcctttatgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataat 22532238  T
Q  118 acccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggt 217  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22532237 acccaaacatccattgaaggcttattagaaaaagtaaaattacactctttatggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggt 22532138  T
Q  218 ggtggtcggatcctatgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagtacatct 317  Q
    |||||| |||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||    
T  22532137 ggtggttggatcctatgctttgtttaggtatcgacgcactcgatttattgtacttactacatttgtttgactc-ttgaggggtgacttcttagtacatct 22532039  T
Q  318 tgtacttaggaggttttaccgcctttgttaatatattccatttttgtttctt 369  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  22532038 tgtacttaggaggtttcaccgcctttgttaatatataccatttttgtttctt 22531987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 392 - 503
Target Start/End: Original strand, 3500745 - 3500856
Alignment:
Q  392 ctaacgtgaattaaaatcacgtatcattcataagagtgggatggaaatgagtaatgataattttggtattatgaataaattttaattaaatttggatgta 491  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||    
T  3500745 ctaacgtgaattaaaatcatgtatcattcataagagtgggaaggaaatgagtaaggataattttgttattatgaataaattttaattgaatttgggtgta 3500844  T
Q  492 acttgatatttt 503  Q
    ||||||||||||    
T  3500845 acttgatatttt 3500856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 26513501 - 26513437
Alignment:
Q  61 tggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 125  Q
    |||||||||||||| ||| ||||||||||||| |||||||||| | |||||||||||| ||||||    
T  26513501 tggttactttgtgtctgggtggtttggaatgaccgcaacaacataatttttaataataaccaaac 26513437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 2710068 - 2710240
Alignment:
Q  52 cagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaag 151  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||| || |||||| | ||||  || | ||||||  |||||||     | | ||||| ||    
T  2710068 cagcttatttggttactttgtgtttgggtggtttggaatgaacgtaataacagattatttaggaacatccaaactcccattgatcaactgttagaaagag 2710167  T
Q  152 taaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtc 224  Q
    ||||||   | || || ||||||||||||||| |||| ||||| ||||||||  ||| |||||| ||||||||    
T  2710168 taaaatcttattcgttatggtggctaaaagcttgtaaggccacgtttgtgtatagttatcaaagatggtggtc 2710240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 14586076 - 14586160
Alignment:
Q  167 tttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtattga 251  Q
    |||||||||| ||| ||| ||| |||||||||||||| ||| || | || ||||||||||||||| ||||||||||  |||||||    
T  14586076 tttggtggctgaaaactaataatgccacatttgtgtatggtgcttagagatggtggtcggatcctttgctttgtttgcgtattga 14586160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 25350019 - 25349927
Alignment:
Q  42 atcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattga 134  Q
    ||||||||| |||||  | |||||||||||||| ||| | ||||||||| |||| ||||| ||| | |||||||||| ||||||  |||||||    
T  25350019 atcctttcttcagctgttgtggttactttgtgtctgggtagtttggaataaacgtaacaatagaatatttaataatatccaaactaccattga 25349927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 14687368 - 14687435
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 125  Q
    ||||||||||||||||| | | |||||||||| ||||| || || || ||||||||||||| ||||||    
T  14687368 atttggttactttgtgttttggtggtttggaacgaacgtaataataggctttttaataatatccaaac 14687435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 31706461 - 31706382
Alignment:
Q  148 aaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 227  Q
    ||||| ||||| || || || |||||||||||||||| ||| ||||| ||||||| ||| ||||| || |||||||||||    
T  31706461 aaagttaaattccattcgttatggtggctaaaagctaataatgccacgtttgtgtgcggctctcagagatggtggtcgga 31706382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 6937064 - 6936982
Alignment:
Q  166 ttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtat 248  Q
    ||||||||||| | ||||| ||| ||||  ||||||||||||||||| || ||| |||| || |||||| ||||||| |||||    
T  6937064 ttttggtggctgagagctaataacgccatttttgtgtacggttctcagagatggcggtcagaccctatgatttgtttgggtat 6936982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 14844457 - 14844487
Alignment:
Q  18 tacaggtcatacgagggcgcgtagatccttt 48  Q
    |||||||||||||||||||||||||||||||    
T  14844457 tacaggtcatacgagggcgcgtagatccttt 14844487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 27580685 - 27580599
Alignment:
Q  148 aaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatg 234  Q
    ||||||||||| || ||||| ||||||||||||||||  ||  | || |||||||| ||  |||| || ||||||||||||||||||    
T  27580685 aaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatggcactcacagatggtggtcggatcctatg 27580599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 33095619 - 33095561
Alignment:
Q  190 gccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtat 248  Q
    ||||| |||||||||||||||||||| ||||||||||| ||| || | ||| |||||||    
T  33095619 gccacttttgtgtacggttctcaaagatggtggtcggaccctttgttatgtctaggtat 33095561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 14497669 - 14497616
Alignment:
Q  308 tagtacatcttgtacttaggaggttttaccgcctttgttaatatattccatttt 361  Q
    ||||||| |||||||||||||| ||  | |||| ||||||||||||||||||||    
T  14497669 tagtacaccttgtacttaggagtttccatcgccgttgttaatatattccatttt 14497616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 3545421 - 3545772
Alignment:
Q  18 tacaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||| |||||||||||||    
T  3545421 tacaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtatggatggtttgaaatgaaagcaacaacaaactttttaataat 3545520  T
Q  118 acccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||||||||||    
T  3545521 acccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttatggtggctaaaagctagtaaagccacatttatataaggttctcaaaggt 3545620  T
Q  218 ggtggtcggatcctatgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagtacatct 317  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||    
T  3545621 ggtggtcggatcctatgctttgtttaggtatcgacgcacccggtttattgtaattactacatttgtttgactctttgaggggtgacttcttaatatatct 3545720  T
Q  318 tgtacttaggaggttttaccgcctttgttaatatattccatttttgtttctt 369  Q
    | ||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  3545721 tatacttaggaggttttaccgtctttgttaatatataccatttttgtttctt 3545772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 53 - 369
Target Start/End: Original strand, 34824833 - 34825148
Alignment:
Q  53 agctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagt 152  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  34824833 agctcatttggttactatgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatattcaaacatccattgaaggtttatcagaaaaagt 34824932  T
Q  153 aaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtattgac 252  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| ||||| |||    
T  34824933 aaaattacattctttatggtggctaaaagttagtaaagccacatttgtgtacggttatcaaaggtggtggttggaccctatgctttgtttgggtatcgac 34825032  T
Q  253 gcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagtacatcttgtacttaggaggttttaccgcctttgttaatata 352  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||| || |||| |||||||||||||    
T  34825033 gcacccgatttattgtaattactacatttgtttgactctttcaggactgacttcttagtacatcttgtatttaggaggcttcaccg-ctttgttaatata 34825131  T
Q  353 ttccatttttgtttctt 369  Q
    |  ||||||||||||||    
T  34825132 tatcatttttgtttctt 34825148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 49458550 - 49458198
Alignment:
Q  18 tacaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataat 117  Q
    |||||||||  ||| ||| |||||||||||||| || || |||||||| |||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  49458550 tacaggtcactcgaaggcacgtagatcctttcttcaacttatttggttgctttgtgtgtggatggtttgaaatgaacgcaacaaatgactttttaataat 49458451  T
Q  118 acccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggt 217  Q
    | |||||||| ||||||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49458450 atccaaacattcattgaaggtttatcagaaaaagtaaaattatattctttatggtggctaaaagctagtaaagccacatttgtgtacggttatcaaaggt 49458351  T
Q  218 ggtggtcggatcctatgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagtacatct 317  Q
    |||||||||| ||||||| |||||| ||||| |||||| ||| ||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||    
T  49458350 ggtggtcggaccctatgcattgtttgggtatcgacgcatccgatttattgtaattactacatttatttgactcttgcaggggtgacttcttagtacatct 49458251  T
Q  318 tgtacttaggaggttttaccgcctttgttaatatattccatttttgtttcttc 370  Q
    |||| |||||||| || ||||||||||||||||||| ||||||||||||||||    
T  49458250 tgtatttaggaggcttcaccgcctttgttaatatataccatttttgtttcttc 49458198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 1248905 - 1249255
Alignment:
Q  17 atacaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataa 116  Q
    ||||||||||  ||| |||| || |||||||||| || || |||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||    
T  1248905 atacaggtcactcgaaggcgtgtcgatcctttcttcaacttatttggttactttgtgtgtggatgatttggaatgaacgcaacaacaaacattttaataa 1249004  T
Q  117 tacccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaagg 216  Q
     | |||||| ||||| ||||  |||| | ||||| | |||||||| ||||| |||||||||||||||||||| | ||||||||||||||| |||||||||    
T  1249005 catccaaacctccatcgaagatttattacaaaaa-ttaaattacattctttatggtggctaaaagctagtaatggcacatttgtgtacggctctcaaagg 1249103  T
Q  217 tggtggtcggatcctatgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagtacatc 316  Q
    |||||| |||| ||| || | ||||| ||||| |||  | || |||| |||||||||||  || ||| ||||| ||||||| ||||| ||||||||||||    
T  1249104 tggtggccggaccctctgttatgtttgggtatcgactgatcctgttt-ttgtaattactgtatctgtatgactgtttgaggggtgacctcttagtacatc 1249202  T
Q  317 ttgtacttaggaggttttaccgcctttgttaatatattccatttttgtttctt 369  Q
    ||||||| |||||| ||    |||||||||||||||| |||||||||| ||||    
T  1249203 ttgtactaaggaggcttcgaggcctttgttaatatataccatttttgtgtctt 1249255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 13868175 - 13868344
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaat 157  Q
    ||||||||||| ||||| ||| |||||||||||||||| || || ||||||| |||||||| ||||||| |||| |||    ||  | ||||||| ||||    
T  13868175 atttggttactatgtgtttggttggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacaactagtaaaaaaagttaaat 13868274  T
Q  158 tacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 227  Q
      |||||||| |||||||||||||||| ||| ||||  ||| |||||||| | ||||| |||||||||||    
T  13868275 atcactctttgtggtggctaaaagctaataaggccaattttatgtacggtacacaaagatggtggtcgga 13868344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 61 - 215
Target Start/End: Original strand, 26510719 - 26510873
Alignment:
Q  61 tggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaattac 160  Q
    |||||||||||||  ||| | || ||||||||||| ||||||||||||  |||||||| ||||||   |||||||    ||  ||||||||||||||| |    
T  26510719 tggttactttgtgcctggtttgtgtggaatgaacgtaacaacagacttcataataatatccaaaccaacattgaacaactagtagaaaaagtaaaatttc 26510818  T
Q  161 actctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaag 215  Q
    |||| ||||||| ||| ||||||| ||| ||||| ||| ||||||||||||||||    
T  26510819 actccttttggtagcttaaagctaataaggccacttttatgtacggttctcaaag 26510873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 33150775 - 33150606
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaat 157  Q
    ||||||||||||||||| ||| |||||||||||||||| || || ||||| | |||||| | ||||||  || |||||    || |||| ||||||| ||    
T  33150775 atttggttactttgtgtttggttggtttggaatgaacgtaataatagactctataataacatccaaaccaccgttgaacaactagcagataaagtaagat 33150676  T
Q  158 tacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 227  Q
    | |||||||| |||||||| |||||||  |||| ||  ||| |||||||| ||||||| |||||||||||    
T  33150675 ttcactctttatggtggcttaaagctaacaaagtcaattttatgtacggtactcaaagatggtggtcgga 33150606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 207
Target Start/End: Complemental strand, 5808536 - 5808387
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaat 157  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||| | ||  ||| |||| ||||||  |||| |||    || ||||||||||||| |    
T  5808536 atttggttactttgtgtctggttggtttggaacgaacgtaacaacaaatttcataacaatatccaaaccaccatcgaacagctagcagaaaaagtaaagt 5808437  T
Q  158 tacactctttttggtggctaaaagctagtaaagccacatttgtgtacggt 207  Q
    | |||||||||| |||||| ||||||| ||| | ||| |||||| |||||    
T  5808436 ttcactctttttagtggcttaaagctaataaggtcacttttgtgcacggt 5808387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 45795211 - 45795042
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaat 157  Q
    ||||||||||| ||||| ||| |||||||||||| ||| || || ||||||| |||||||| | ||||| |||| ||||   ||  ||||||||| ||||    
T  45795211 atttggttactatgtgtttggttggtttggaatgtacgtaataatagactttataataatatcaaaacaaccatggaagagctagtagaaaaagttaaat 45795112  T
Q  158 tacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 227  Q
      |||||||| ||||||||||| | || ||| ||||  ||| |||||||| | ||||  |||||||||||    
T  45795111 atcactctttgtggtggctaaaggttaataaggccaattttatgtacggtacacaaaaatggtggtcgga 45795042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 38204335 - 38204417
Alignment:
Q  166 ttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtat 248  Q
    |||| |||||||||||||| ||| || |||||||||||||  || ||||| ||||||||||| ||| || ||||||| |||||    
T  38204335 ttttagtggctaaaagctaataatgctacatttgtgtacgactcgcaaagatggtggtcggaccctttgatttgtttgggtat 38204417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 44762065 - 44762003
Alignment:
Q  307 ttagtacatcttgtacttaggaggttttaccgcctttgttaatatattccatttttgtttctt 369  Q
    |||||||||||||| || | | |||||||||| |  |||||||||| ||||||||||||||||    
T  44762065 ttagtacatcttgtgctgaagtggttttaccgtcgatgttaatataatccatttttgtttctt 44762003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 5287689 - 5287612
Alignment:
Q  148 aaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcg 225  Q
    ||||||||||| || || || |||||||| ||||| |  |||  ||| |||||||||||||||||||| |||||||||    
T  5287689 aaagtaaaatttcattcgttgtggtggcttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcg 5287612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 36379700 - 36379663
Alignment:
Q  192 cacatttgtgtacggttctcaaaggtggtggtcggatc 229  Q
    ||||||||||||||||||||| || |||||||||||||    
T  36379700 cacatttgtgtacggttctcagagatggtggtcggatc 36379663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 272; Significance: 1e-151; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 31 - 369
Target Start/End: Complemental strand, 11237613 - 11237274
Alignment:
Q  31 agggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatcca 130  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11237613 agggcgcgtagatcctttatgcagctcatttggttattttgtgtgtagatggtttggaatgaacgcaacaacagactttttaataatacccaaacatcca 11237514  T
Q  131 ttgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcc 230  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  11237513 ttgaaggcttatcagataaagtaaaattgcactctttatggtggctaaaagctagtaaagtcacatttgtgtacggttctcaaaggtggtggtcagatcc 11237414  T
Q  231 tatgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagtacatcttgtacttaggagg 330  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  11237413 tatgctttgtttaggtatcgacgcatccggtttattgtaattactacatttgtttgactctttgaggggtgacttcttaatacatcttgtacttaggagg 11237314  T
Q  331 ttttaccgcc-tttgttaatatattccatttttgtttctt 369  Q
    ||| |||||| ||||||||||||| |||| ||||||||||    
T  11237313 tttcaccgccttttgttaatatataccatctttgtttctt 11237274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 31674749 - 31674397
Alignment:
Q  19 acaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataata 118  Q
    |||||||| |||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31674749 acaggtcacacgaaggcgcgtagatcctttcttcagctcatttggttactatgtgtgtggatggtttggaatgaacgcaacaacagactttttaataata 31674650  T
Q  119 cccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtg 218  Q
     ||||||||| |||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  31674649 tccaaacatcaattgaaggtttatcagaaaaagtaaaattacattgtttatggtggctaaaagctagtaaagccaaatttgtgtacggttatcagaggtg 31674550  T
Q  219 gtggtcggatcctatgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagtacatctt 318  Q
    |||||||||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  31674549 gtggtcggactctatgctttgtttgggtatcgacgcacccggtttattgtaattactacatttgtttgactctttcaggggtgactgcttagtacatctt 31674450  T
Q  319 gtacttaggaggttttaccgcctttgttaat-atattccatttttgtttcttc 370  Q
    |||||||||||  || ||||||||||||||| ||||  |||||||||||||||    
T  31674449 gtacttaggagaattcaccgcctttgttaataatatatcatttttgtttcttc 31674397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 31921671 - 31921947
Alignment:
Q  19 acaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataata 118  Q
    |||||||| |||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31921671 acaggtcacacgaaggcgcgtagatcctttcttcagctcatttggttactatgtgtgtggatggtttggaatgaacgcaacaacagactttttaataata 31921770  T
Q  119 cccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtg 218  Q
     ||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  31921771 tccaaacatcaattgaaggtttatcagaaaaagtaaaattacattctttatggtggctaaaagctagtaaagccaaatttgtgtacggttatcagaggtg 31921870  T
Q  219 gtggtcggatcctatgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttga 295  Q
    ||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31921871 gtggtcgaaccctatgctttgtttgggtatcgacgcacccggtttattgtaattactacatttgtttgactctttga 31921947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 271 - 370
Target Start/End: Original strand, 29830923 - 29831022
Alignment:
Q  271 ttactacatttgtttgactctttgaggagtgacttcttagtacatcttgtacttaggaggttttaccgcctttgttaatatattccatttttgtttcttc 370  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  29830923 ttactacatttgtttgactctttgaggggtgacttcttagtacatcttgtacttagaaggttttaccgcctttgttaatatataccatttttgtttcttc 29831022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 34829215 - 34829032
Alignment:
Q  42 atcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggctta 141  Q
    ||||||||| || || || | |||||||||||  | | |||||||||||||| | ||||||||||||  |||||||| ||||||   |||||||    ||    
T  34829215 atcctttcttcaacttatatagttactttgtgccttgttggtttggaatgaatgtaacaacagacttcataataatatccaaaccaacattgaacaacta 34829116  T
Q  142 tcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcg 225  Q
      ||||||||| ||||| ||||| ||||||||||| ||||||| ||| ||||| ||| |||||| ||||||||| |||||||||    
T  34829115 gtagaaaaagttaaatttcactccttttggtggcttaaagctaataaggccacttttatgtacgattctcaaagatggtggtcg 34829032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 20857736 - 20857567
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaat 157  Q
    ||||||||||| ||||| ||| |||||||||||||||| || || ||||||| |||||||| ||||||| |||| |||    ||  ||||||||| ||||    
T  20857736 atttggttactatgtgtctggttggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacaactagtagaaaaagttaaat 20857637  T
Q  158 tacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 227  Q
      |||||||| |||||||| || |||| ||| ||||  ||| |||||||| | ||||| |||||||||||    
T  20857636 accactctttgtggtggctcaaggctaataaggccaattttatgtacggtacacaaagatggtggtcgga 20857567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 40514050 - 40514235
Alignment:
Q  42 atcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggctta 141  Q
    ||||||||| || || ||||||||||| ||||| ||| |||||||||||||||| || || ||||| | |||||||| ||||||  |||| |||    ||    
T  40514050 atcctttctacaacttatttggttactatgtgtttggttggtttggaatgaacgtaataatagactctataataatatccaaaccaccatggaacaacta 40514149  T
Q  142 tcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 227  Q
      ||||||||| ||||  |||||||| ||||||||||| |||| ||| ||||  ||| |||||||||| ||||  |||||||||||    
T  40514150 gtagaaaaagttaaatatcactctttgtggtggctaaaggctaataaggccaactttatgtacggttcacaaaaatggtggtcgga 40514235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 35216245 - 35216328
Alignment:
Q  42 atcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 125  Q
    ||||||||| |||||||||||||||||| |||| ||| |||| |||||||  || ||||| ||| | |||||||||||||||||    
T  35216245 atcctttcttcagctcatttggttacttggtgtctgggtggtctggaatgctcgtaacaatagaatatttaataatacccaaac 35216328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 20858008 - 20857940
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaaca 126  Q
    ||||||||||| ||||| ||| |||||||||||||||| || || ||||||| |||||||| |||||||    
T  20858008 atttggttactatgtgtctggttggtttggaatgaacgtaataatagactttataataatatccaaaca 20857940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 53941115 - 53941023
Alignment:
Q  42 atcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattga 134  Q
    ||||||||| |||||  | |||||||||||||| ||| | |||||||||||||| ||||| ||| | |||||||||| ||||||  |||||||    
T  53941115 atcctttcttcagctgctgtggttactttgtgtatgggtagtttggaatgaacgtaacaatagaatatttaataatatccaaactaccattga 53941023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 21400154 - 21399996
Alignment:
Q  67 ctttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaattacactctt 166  Q
    ||||||||||||||| | ||||| ||||| ||||||||||| || || || ||  ||||| | |||||     ||| ||| ||||| ||||| || || |    
T  21400154 ctttgtgtgtggatgatatggaacgaacgaaacaacagactattcaaaaacactgaaacacctattgagcagctattagataaagttaaatttcattcgt 21400055  T
Q  167 tttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcg 225  Q
    | |||||||| ||||| | |||  |||| |||||||||||||||||||| |||||||||    
T  21400054 tgtggtggcttaaagccaataataccacttttgtgtacggttctcaaagttggtggtcg 21399996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 7935632 - 7935555
Alignment:
Q  148 aaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcg 225  Q
    ||||||||||| || ||||| |||||||| ||||| |  ||| |||| |||||||||||||||||||| |||| ||||    
T  7935632 aaagtaaaatttcattctttgtggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttggtagtcg 7935555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Original strand, 39738716 - 39738753
Alignment:
Q  332 tttaccgcctttgttaatatattccatttttgtttctt 369  Q
    |||||||||||| |||||||||||||||||||||||||    
T  39738716 tttaccgcctttattaatatattccatttttgtttctt 39738753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 52735091 - 52735042
Alignment:
Q  317 ttgtacttaggaggttttaccgcctttgttaatatattccatttttgttt 366  Q
    |||||||||| | ||||||||| |||||||||||||| ||||||||||||    
T  52735091 ttgtacttagaaagttttaccgtctttgttaatatataccatttttgttt 52735042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 36624189 - 36624240
Alignment:
Q  74 tgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 125  Q
    ||||||| |||||||||||||||| ||||||| |||||||||| || |||||    
T  36624189 tgtggatagtttggaatgaacgcagcaacagagtttttaataacactcaaac 36624240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 47748934 - 47748776
Alignment:
Q  67 ctttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaattacactctt 166  Q
    ||||||||||||||||| ||||| ||||| || |||||| | || || || ||  ||||| | ||||||    ||| | | ||||| ||||| || || |    
T  47748934 ctttgtgtgtggatggtgtggaacgaacgaaataacagattgttcaaaaacactgaaacacctattgaacaactattaaataaagttaaatttcattcgt 47748835  T
Q  167 tttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcg 225  Q
    | |||||||| ||||| | |||  |||| |||||||||||||||||||| |||||||||    
T  47748834 tgtggtggcttaaagccaataataccacttttgtgtacggttctcaaagttggtggtcg 47748776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 230; Significance: 1e-126; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 6985053 - 6985409
Alignment:
Q  18 tacaggtcatacgagggcgcgtagatcctttctgcagctcattt-----ggttactttgtgtgtggatggtttggaatgaacgcaacaacagacttttta 112  Q
    |||||||||  ||| |||||||| ||||||||| ||||| ||||     | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6985053 tacaggtcactcgaaggcgcgtatatcctttcttcagcttatttaatttgattactttgtgtgtggatggtttggaatgaacgcaacaacagacttttta 6985152  T
Q  113 ataatacccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctca 212  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  6985153 ataatatccaaacatccattgaaggtttatcagaacaagtaaaattacattctttatggtggctaaaagctagtaaagccacatttgtgtacggttatca 6985252  T
Q  213 aaggtggtggtcggatcctatgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagta 312  Q
    ||| ||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  6985253 aagatggtggtcggaccctatgctttgtttgggtatcgacgcacccggtgtattgtaattactacatttgtttgactcttgcaggggtgacttcttagta 6985352  T
Q  313 catcttgtacttaggaggttttaccgcctttgttaatatattccatttttgtttcttc 370  Q
    ||||||||||||| |||  || ||||||||||||||||||| ||||||||||||||||    
T  6985353 catcttgtactta-gagacttcaccgcctttgttaatatataccatttttgtttcttc 6985409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 33 - 370
Target Start/End: Complemental strand, 3939020 - 3938682
Alignment:
Q  33 ggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccatt 132  Q
    |||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||  ||||||||||| |||||||||||||| |||||||| |||     
T  3939020 ggcgcgtagatcctttcttcagcttatttggttgctttgtgtttggatcgtttggaatagacgcaacaacatactttttaataatatccaaacatgcata 3938921  T
Q  133 gaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatccta 232  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||    
T  3938920 gaaggtttatcagaaaaagtaaaattacattctttatggtggc-aaaagctagtaaagccacatttgtgtaaggttatcaaaggtggtggtcggacccta 3938822  T
Q  233 tgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagtacatcttgtacttaggaggtt 332  Q
    || | |||||   ||| |||| ||||||||||||||||||||||||||||| ||||| ||| | | |||||||||||||||||||||||||||||||| |    
T  3938821 tgttatgtttgaatatcgacgtacccggtttattgtaattactacatttgtatgactgtttcacgggtgacttcttagtacatcttgtacttaggaggct 3938722  T
Q  333 ttaccgcctttgttaat--atattccatttttgtttcttc 370  Q
    | |||||||||||||||  |||| ||||||||||||||||    
T  3938721 tcaccgcctttgttaatatatataccatttttgtttcttc 3938682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 267 - 370
Target Start/End: Original strand, 40822295 - 40822398
Alignment:
Q  267 gtaattactacatttgtttgactctttgaggagtgacttcttagtacatcttgtacttaggaggttttaccgcctttgttaatatattccatttttgttt 366  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  40822295 gtaattattacatttgtttgactctttaaggggtgacttcttaatatatcttgtacttaggaggtttcaccgcctttgttaatatatactatttttgttt 40822394  T
Q  367 cttc 370  Q
    ||||    
T  40822395 cttc 40822398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 9510576 - 9510407
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaat 157  Q
    |||||||||| |||||| ||| |||||| ||| ||||| ||||||| | ||  ||| |||| ||||||  ||||||||    || ||||||||||||| |    
T  9510576 atttggttacattgtgtctggttggtttcgaacgaacgtaacaacaaatttcataacaatatccaaaccaccattgaacaactagcagaaaaagtaaagt 9510477  T
Q  158 tacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 227  Q
    | ||||||||||||||||| ||||||| ||| ||||| |||||| | ||| |||| || |||||||||||    
T  9510476 ttcactctttttggtggcttaaagctaataaggccacttttgtgcagggtactcacagatggtggtcgga 9510407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 25192887 - 25192793
Alignment:
Q  40 agatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattga 134  Q
    ||||||||||| |||||  | |||||||||||||| ||| | |||||||||||||||||||| ||| | |||||||||| ||||||  |||||||    
T  25192887 agatcctttcttcagctgttgtggttactttgtgtctgggtagtttggaatgaacgcaacaatagaatatttaataatatccaaactaccattga 25192793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 39432571 - 39432465
Alignment:
Q  18 tacaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataat 117  Q
    |||||||||  |||||  ||| ||||||||||| |||||  | |||||||| ||||| ||| ||||||| |||||||||||||||| | | |||||||||    
T  39432571 tacaggtcactcgaggatgcgcagatcctttcttcagctgctgtggttactatgtgtctgggtggtttgaaatgaacgcaacaacataatatttaataat 39432472  T
Q  118 acccaaa 124  Q
    | |||||    
T  39432471 atccaaa 39432465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 6244929 - 6244763
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttt-taataatacccaaacatccattgaaggcttatcagaaaaagtaaaa 156  Q
    ||||||||||||||||| ||| ||||||| | |||||| ||||||||| ||   ||| |||| ||||||  |||| |||    || |||||||||| ||     
T  6244929 atttggttactttgtgtctggttggtttgta-tgaacgtaacaacagatttcaataacaatatccaaaccaccatcgaacaactagcagaaaaagtgaag 6244831  T
Q  157 ttacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtc 224  Q
    || ||||||||||| ||||| ||||||| ||| || || |||||||||||| |||| || ||||||||    
T  6244830 tttcactctttttgatggcttaaagctaataaggctacttttgtgtacggtactcacagatggtggtc 6244763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 25900811 - 25900749
Alignment:
Q  61 tggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaa 123  Q
    |||||||||||||  ||| |||||||||||||||| ||||||||||||  |||||||| ||||    
T  25900811 tggttactttgtgcctggttggtttggaatgaacgtaacaacagacttcataataatatccaa 25900749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 7488 - 7137
Alignment:
Q  18 tacaggtcatacgagggcgcgtagatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataat 117  Q
    ||||||||| || | | |||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7488 tacaggtcacacaaagacgcgtagatcctttattcagctcatttggttactatgtgtgtggatggtttggaatgaacgcaacaacagactttttaataat 7389  T
Q  118 acccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggt 217  Q
    | ||||||||| |||||||| ||||||| |||||||| |||||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  7388 atccaaacatcaattgaaggtttatcaggaaaagtaagattacattctttatggtggctaaaacctagtaaagccacatttgtgtacggttatcaaaggt 7289  T
Q  218 ggtggtcggatcctatgctttgtttaggtattgacgcacccggtttattgtaattactacatttgtttgactctttgaggagtgacttcttagtacatct 317  Q
    |||||||| | |||||||||||||| ||||| || ||||||| ||| ||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||    
T  7288 ggtggtcgaaccctatgctttgtttgggtatcgaagcacccgattttttgtaattactacatttgtttaactctttcaggggtgacttcttaatacatct 7189  T
Q  318 tgtacttaggaggttttaccgcctttgttaatatattccatttttgtttctt 369  Q
    || |||||||||| || ||||||||||||||||||| |||||||||||||||    
T  7188 tggacttaggaggcttcaccgcctttgttaatatataccatttttgtttctt 7137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 3e-44; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 392 - 503
Target Start/End: Original strand, 27324511 - 27324622
Alignment:
Q  392 ctaacgtgaattaaaatcacgtatcattcataagagtgggatggaaatgagtaatgataattttggtattatgaataaattttaattaaatttggatgta 491  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||    
T  27324511 ctaacgtgaattaaaatcacgtaccattcataagagtgggaaggaaatgagtaaggataattttggtattatgaataaattttaattgaatttgggtgta 27324610  T
Q  492 acttgatatttt 503  Q
    ||||||||||||    
T  27324611 acttgatatttt 27324622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 224
Target Start/End: Original strand, 38488841 - 38489004
Alignment:
Q  61 tggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaattac 160  Q
    |||||||||||||| ||| |||||||||||||||| || || ||||||| |||||||| ||||||| |||| |||    ||  ||||||||| ||||  |    
T  38488841 tggttactttgtgtttggctggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacagctagtagaaaaagttaaatatc 38488940  T
Q  161 actctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtc 224  Q
    ||||||| |||||| |||| |||| |||  |||  ||| |||||||| | ||||| ||||||||    
T  38488941 actctttgtggtggttaaaggctaataagaccaactttatgtacggtacacaaagatggtggtc 38489004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 35213413 - 35213244
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaat 157  Q
    ||||||||||| ||||| ||| |||||||||||||||| || || | ||||| || ||||| ||||||| |||| |||    ||  ||||||||| ||||    
T  35213413 atttggttactctgtgtttggttggtttggaatgaacgtaataatatactttatactaatatccaaacaaccatggaacagctagtagaaaaagttaaat 35213314  T
Q  158 tacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 227  Q
      |||||||| |||||| |||| |||| ||| ||||  ||| |||||||| | ||||| |||||||||||    
T  35213313 atcactctttgtggtggttaaaggctaataaggccaattttatgtacggtacacaaagatggtggtcgga 35213244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 27724550 - 27724654
Alignment:
Q  144 agaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgttta 243  Q
    |||||||| |||||  || || || |||||| |||||||||||||  |||  ||| |||||||||||||||| ||||||||||||||| | ||||||||     
T  27724550 agaaaaagcaaaatatcattcgttatggtggttaaaagctagtaacaccaattttatgtacggttctcaaagatggtggtcggatcctttactttgtttg 27724649  T
Q  244 ggtat 248  Q
    |||||    
T  27724650 ggtat 27724654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 30802224 - 30802324
Alignment:
Q  148 aaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggta 247  Q
    |||||||| || ||||| | | ||||||| ||||||| ||| ||||| ||||||||||||||||| ||  |||||||||| ||| || ||||||| ||||    
T  30802224 aaagtaaattttcactcgtatcggtggctgaaagctaataacgccacgtttgtgtacggttctcagagacggtggtcggaccctttgatttgtttgggta 30802323  T
Q  248 t 248  Q
    |    
T  30802324 t 30802324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 26855493 - 26855426
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 125  Q
    ||||||||||||||||| ||| |||||||||| ||||| || || || ||||||||||||| ||||||    
T  26855493 atttggttactttgtgtttgggtggtttggaacgaacgtaataataggctttttaataatatccaaac 26855426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 19512088 - 19512008
Alignment:
Q  168 ttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtat 248  Q
    ||||||||| ||||||| ||| | ||  ||||||||||||||||| || ||||||||||| ||||||  |||||| |||||    
T  19512088 ttggtggctgaaagctaataacgtcatgtttgtgtacggttctcagagatggtggtcggaccctatgaattgtttgggtat 19512008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 27096832 - 27096755
Alignment:
Q  148 aaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcg 225  Q
    ||||| ||||| || || || |||||||| ||||| |  ||| |||| |||||||||||||||||||| |||||||||    
T  27096832 aaagttaaatttcattcgttgtggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttggtggtcg 27096755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 27181471 - 27181548
Alignment:
Q  148 aaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcg 225  Q
    ||||| ||||| || || || |||||||| ||||| |  ||| |||| |||||||||||||||||||| |||||||||    
T  27181471 aaagttaaatttcattcgttgtggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttggtggtcg 27181548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 8e-42; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 392 - 503
Target Start/End: Original strand, 28359306 - 28359417
Alignment:
Q  392 ctaacgtgaattaaaatcacgtatcattcataagagtgggatggaaatgagtaatgataattttggtattatgaataaattttaattaaatttggatgta 491  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| | ||||||| ||||    
T  28359306 ctaacgtgaattaaaatcacgtatcattcataagagtgggaaggaaatgagtaaggataattttgatattatgaataaattttaaatgaatttgggtgta 28359405  T
Q  492 acttgatatttt 503  Q
    ||||||||||||    
T  28359406 acttgatatttt 28359417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 6874654 - 6874751
Alignment:
Q  273 actacatttgtttgactctttgaggagtgacttcttagtacatcttgtacttaggaggttttaccgcctttgttaatatattccatttttgtttcttc 370  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  6874654 actacatttgtttgactctttgaggggtgacttcttaatacatcttgtacttaggaggtttcaccgcctttgttaatatataccatttttgtttcttc 6874751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 43517090 - 43517256
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaat 157  Q
    ||||||||||||||||| ||| |||||||||||||||| || || ||||||| |||||||| ||||||| |||| ||| |  ||  ||||||||| ||||    
T  43517090 atttggttactttgtgtttggttggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacggctagtagaaaaagttaaat 43517189  T
Q  158 tacactctttttggtggctaaaagctagtaaagccacatttg-tgtacggttctcaaaggtggtggtc 224  Q
      |||||||| ||||||||||| |||| ||| |||| ||||| |||||||| | ||||| ||||||||    
T  43517190 atcactctttgtggtggctaaaggctaataaggcca-atttgatgtacggtacacaaagatggtggtc 43517256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 20543865 - 20543696
Alignment:
Q  58 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaat 157  Q
    ||||||||||||||||| ||| |||||||||||||||| || || |||||||||||||||| ||||||  |  |||||    || |||| ||||| | ||    
T  20543865 atttggttactttgtgtttgggtggtttggaatgaacgtaataatagactttttaataatatccaaaccacggttgaacaactagcagataaagttagat 20543766  T
Q  158 tacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 227  Q
    | || ||||| |||||||| |||||||  |||||||  ||| |||| ||| | ||||| |||||||||||    
T  20543765 ttcattctttatggtggcttaaagctaacaaagccaattttatgtatggtacccaaagatggtggtcgga 20543696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 19119875 - 19119792
Alignment:
Q  40 agatcctttctgcagctcatttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaa 123  Q
    |||||||| || |||||| |||||||||||||||| |||||||||||||||||||| || |||| | | |||||||||| ||||    
T  19119875 agatccttccttcagctcgtttggttactttgtgtctggatggtttggaatgaacgtaataacaaaatatttaataatatccaa 19119792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 32348758 - 32348858
Alignment:
Q  148 aaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggta 247  Q
    ||||||||||| ||||| | ||||||||| |||||||  |  ||||  ||||||||||||||||| || ||||||||||||||| || ||||||| ||||    
T  32348758 aaagtaaaatttcactcgtattggtggctgaaagctaagaccgccatgtttgtgtacggttctcagagatggtggtcggatcctttgatttgtttgggta 32348857  T
Q  248 t 248  Q
    |    
T  32348858 t 32348858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 27299861 - 27299781
Alignment:
Q  143 cagaaaaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggt 223  Q
    ||||||||||||| || ||||||||||||||||| ||||||| |||  |||| |||||| ||||| |||| || |||||||    
T  27299861 cagaaaaagtaaagtttcactctttttggtggcttaaagctaataagaccacttttgtgcacggtactcacagatggtggt 27299781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 41879422 - 41879590
Alignment:
Q  80 tggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaattacactctttttggtggctaaa 179  Q
    |||| ||||||||||| ||||||||||| || ||||| ||  ||||||| |||||     | | ||| ||||| ||||| ||||| || |||||  ||||    
T  41879422 tggtgtggaatgaacgaaacaacagactgttcaataacactgaaacatctattgagcaactcttagataaagttaaatttcactcgttgtggtgattaaa 41879521  T
Q  180 agctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtat 248  Q
    ||||| |||| |||| ||| |||||||||||||||  ||||||||| | ||| | |||||| |||||||    
T  41879522 agctaataaaaccacttttatgtacggttctcaaaactggtggtcgaaccctttactttgtctaggtat 41879590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 362
Target Start/End: Complemental strand, 20543615 - 20543561
Alignment:
Q  307 ttagtacatcttgtacttaggaggttttaccgcctttgttaatatattccattttt 362  Q
    ||||||||||||||||||||| | ||| || ||| |||||||||||||||||||||    
T  20543615 ttagtacatcttgtacttaggtg-tttcactgccgttgttaatatattccattttt 20543561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 451 - 493
Target Start/End: Original strand, 50344859 - 50344901
Alignment:
Q  451 attttggtattatgaataaattttaattaaatttggatgtaac 493  Q
    |||||||||||||| || ||||||||||||| |||||||||||    
T  50344859 attttggtattatggattaattttaattaaaattggatgtaac 50344901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 52814177 - 52814100
Alignment:
Q  148 aaagtaaaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcg 225  Q
    ||||||||||| || || || |||||||| ||||| |  |||  ||| |||||||||||||||||||| |||||||||    
T  52814177 aaagtaaaatttcattcgttgtggtggcttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcg 52814100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 56337963 - 56338048
Alignment:
Q  163 tctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtat 248  Q
    ||||| ||||||||||||||||  || ||||| ||||| || ||||||||||| ||||||| ||| |   |||||||||| |||||    
T  56337963 tctttgtggtggctaaaagctaacaatgccacttttgtttatggttctcaaagatggtggttggaccggttgctttgtttgggtat 56338048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 64205 - 64303
Alignment:
Q  154 aaattacactctttttggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcggatcctatgctttgtttaggtattgac 252  Q
    ||||| || ||||| |||||||| || || | ||| ||||||||||||||||||||||| || || |||||||||||| | |||||||| ||| |||||    
T  64205 aaatttcattctttatggtggcttaaggcaaataatgccacatttgtgtacggttctcagagatgatggtcggatcctttactttgtttgggtcttgac 64303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 50946 - 50987
Alignment:
Q  190 gccacatttgtgtacggttctcaaaggtggtggtcggatcct 231  Q
    |||||||||||||| |||||||| || |||||||||||||||    
T  50946 gccacatttgtgtaaggttctcagagatggtggtcggatcct 50987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University