View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13055_low_11 (Length: 475)
Name: NF13055_low_11
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 887044 - 887467
Alignment:
| Q |
19 |
taaagactatgaagttcttctcaaacttgtgagcaaaaatcatagaaattaaataactataacgttttcagttcatagtggttgttgatcaaatattaat |
118 |
Q |
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|||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
887044 |
taaagactataaagttcttctcgatcttgtgagcaaaaatcatagaaattaaataactataacgttttcagttcatagtggttgttgatcaaatattaat |
887143 |
T |
|
| Q |
119 |
tgatattttagataaacacagaattgaataataaaggaacgtttaaacaagctgaggaagacgatctaatttgttggacgggtaagatatttcagtctat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
887144 |
tgatattttagataaacacagaattgaataataaaggaacgtttaaaaaagctgaggaagacgatctaatttgttggacgggtaagatatttcagtctat |
887243 |
T |
|
| Q |
219 |
agaccaagtgagcaaagattatttgaagcctataatattgagcatcacaaacaacaaaaacaatgtgaagtttgaattactagttaaacattatataaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||| |
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| T |
887244 |
agaccaagtgagcaaagattatttgaagcctataatattgagcatcacaaac------aacaatgtgaagtttgaattacaagttgaacattatataacc |
887337 |
T |
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| Q |
319 |
ctgtcggtgagcacctttttattaagctacctttgattttatgatcctctaattaagtaattatattctaacatgctagctatatatccttaattttcag |
418 |
Q |
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|| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
887338 |
ctctcggtgagcacctttttgtgaagctacctttgattttatgatcctctaattaagtaattatatactaacatgctagctatatatccttaattttcag |
887437 |
T |
|
| Q |
419 |
agtaaaggaaatatatgcttgctaatcgaa |
448 |
Q |
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| T |
887438 |
agaaaaggaaatatatgcttgctattcgaa |
887467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 31875246 - 31875184
Alignment:
| Q |
74 |
actataacgttttcagttcatagtggttgttgatcaaatattaattgatattttagataaaca |
136 |
Q |
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| T |
31875246 |
actataacattttcagttcatagtggttgttgatcaaatattaattaatattttagataaaca |
31875184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 31880668 - 31880610
Alignment:
| Q |
326 |
tgagcacctttttattaagctacctttgattttatgatcctctaattaagtaattatat |
384 |
Q |
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| T |
31880668 |
tgagcacctttttattaagctacctttgattttatgatcctctaattaaataattatat |
31880610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 93 - 258
Target Start/End: Complemental strand, 31881715 - 31881544
Alignment:
| Q |
93 |
atagtggttgttgatcaaatattaattgatattttagataaacacagaattgaataataaag---gaacgtttaaacaagctgaggaagacgatctaatt |
189 |
Q |
| |
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||||||||||||||||||||||||||| |||||| ||||| ||| ||||||||| ||||| ||| ||||| || | ||||||||| ||||| | |
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| T |
31881715 |
atagtggttgttgatcaaatattaattaatatttcagatacacattgaattgaattttaaaggaagaaagtttacacctattaaggaagacggtctaaat |
31881616 |
T |
|
| Q |
190 |
tgttggacgggt---aagatatttcagtctatagaccaagtgagcaaagattatttgaagcctataatattg |
258 |
Q |
| |
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||||||| |||| || |||| ||||||||||| |||||||||||| |||||||||||||| |||||| |
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| T |
31881615 |
tgttggaagggtgacaaaccatttaagtctatagacgaagtgagcaaagggtatttgaagcctatgatattg |
31881544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 31875100 - 31875053
Alignment:
| Q |
213 |
gtctatagaccaagtgagcaaagattatttgaagcctataatattgag |
260 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||| |||| |
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| T |
31875100 |
gtctatagacgaagtgagcaaagactatttgaagcctataataatgag |
31875053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 378 - 448
Target Start/End: Original strand, 31900074 - 31900142
Alignment:
| Q |
378 |
attatattctaacatgctagctatatatccttaattttcagagtaaaggaaatatatgcttgctaatcgaa |
448 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
31900074 |
attatatactaacatgctagctatatatccttaattttcagagtaaaggaa--atatgtttgctaatcgaa |
31900142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 29146696 - 29146628
Alignment:
| Q |
112 |
tattaattgatattttagataaacacagaattgaataataaaggaacgtttaaacaagctgaggaagac |
180 |
Q |
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||||||||||||||| ||||||||| |||||||||| |||| |||||||| ||||||| |||||||| |
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| T |
29146696 |
tattaattgatatttcagataaacaaagaattgaattcgaaagaaacgtttacacaagctaaggaagac |
29146628 |
T |
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