View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13055_low_12 (Length: 467)
Name: NF13055_low_12
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 46998353 - 46998588
Alignment:
| Q |
18 |
gtttcagtttctctaccaagttctctatgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgctga |
117 |
Q |
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| T |
46998353 |
gtttcagtttctctaccaagttctctatgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgcaga |
46998452 |
T |
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| Q |
118 |
taacatgctaatatcccaaggtcctaaatagcatatttggtttgagtcttcgattgggggacatggtttgataaaacattcagaaacaaggtttagagaa |
217 |
Q |
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| T |
46998453 |
taacatgctaatatcccaaggtcctaaatagcatatttggtttgagtcttcgattgggggacatggtttgataaaacattcagaaacaaggtttagagaa |
46998552 |
T |
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| Q |
218 |
ggagtgttcatttttcagatggcaaaaggacacaga |
253 |
Q |
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| T |
46998553 |
ggagtgttcatttttcagatggcaaaaggacacaga |
46998588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 294 - 456
Target Start/End: Original strand, 46998619 - 46998782
Alignment:
| Q |
294 |
ttcttataaagattattagtaataaaaaattattaaaccaaatgataatgcattgtctgtatatatatgataaataaatacaatatgaacgaccgtgctg |
393 |
Q |
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| T |
46998619 |
ttcttataaagattattagtaataaaaaattattaaaccaaatgataatgcattgtctgtatatatatgacaaataaatacaatatgaacgaccgtgccg |
46998718 |
T |
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| Q |
394 |
cacgctcccacaatcgacaaatacaatattg-tttgtactatgataatacaatatggtccttca |
456 |
Q |
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| T |
46998719 |
cacgctcccacaatcgacagatacaatattgttttgtactatgataatacaatatggttcttca |
46998782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 47002008 - 47002169
Alignment:
| Q |
79 |
ttttttgaagagaagacccttttgaatatagtatgctgataacatgctaatatcccaaggtcctaaatagcatatttggtttgagtcttcgattggggga |
178 |
Q |
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| T |
47002008 |
ttttttgaagagaagtcccttttggatatagtgtgaagatatcatggcaatatcccaaggtcctaaatagcatatttggtttgagtcttcgattggggga |
47002107 |
T |
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| Q |
179 |
catggtttgataaaacattcagaaacaaggtttagagaaggagtgttcatttttcagatggc |
240 |
Q |
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| T |
47002108 |
tatggtttgatgaaacattcagaaacaaggtttagagaaggagtattcatttttcagatggc |
47002169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 46981277 - 46981478
Alignment:
| Q |
18 |
gtttcagtttctctaccaagttctctatgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgctga |
117 |
Q |
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| T |
46981277 |
gtttcagtttctccaccaggttctctatgaaatgttgttggtttagtgatgatgatgttggttttttgaagataagtcccttttggttataatgtgtaga |
46981376 |
T |
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| Q |
118 |
taacatgctaatatcccaaggtcctaaatagcatatttggtttgagtcttcgattgggggacatggtttgataaaacattcagaaacaaggtttagagaa |
217 |
Q |
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| T |
46981377 |
taacatggcaatatcccaatgtgttaaataacatatttgatttgagtctttgattgtgggataaggtttaataaaacatgaagaaacgatgtttagggaa |
46981476 |
T |
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| Q |
218 |
gg |
219 |
Q |
| |
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|| |
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| T |
46981477 |
gg |
46981478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 219
Target Start/End: Original strand, 46975309 - 46975488
Alignment:
| Q |
37 |
gttctctatgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgctgataacatgctaatatcccaa |
136 |
Q |
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| T |
46975309 |
gttctcaatgaagtgttgttggtttagtgat---gatgttggtttcttgaagagaagtcccttttggatatagtgtgtagataacatggcaatatcccaa |
46975405 |
T |
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| Q |
137 |
ggtcctaaatagcatatttggtttgagtcttcgattgggggacatggtttgataaaacattcagaaacaaggtttagagaagg |
219 |
Q |
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| T |
46975406 |
tgtgttagatagcatatttggtttgagtctttgatagggggataaggtttaataaaacatgcagaaacaatgtttagggaagg |
46975488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 46996119 - 46996276
Alignment:
| Q |
44 |
atgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgctgataacatgctaatatcccaaggtccta |
143 |
Q |
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| T |
46996119 |
atgaaatgctgttggtttagtgatgaag---ttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgcta |
46996215 |
T |
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| Q |
144 |
aatagcatatttggtttgagtcttcgattgggggacatggtttgataaaacattcagaaac |
204 |
Q |
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| T |
46996216 |
aatagcaaatttgctttgagtcttcaattggaggataaggtttgataaagcattcagaaac |
46996276 |
T |
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