View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13055_low_14 (Length: 408)

Name: NF13055_low_14
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13055_low_14
NF13055_low_14
[»] chr3 (2 HSPs)
chr3 (72-392)||(7037478-7037798)
chr3 (21-90)||(19178112-19178181)
[»] chr4 (3 HSPs)
chr4 (13-90)||(10708422-10708499)
chr4 (13-90)||(10922192-10922269)
chr4 (181-217)||(54163994-54164030)
[»] chr2 (3 HSPs)
chr2 (13-90)||(41247873-41247950)
chr2 (13-88)||(44377847-44377922)
chr2 (13-88)||(44393427-44393502)
[»] scaffold0093 (1 HSPs)
scaffold0093 (13-88)||(13658-13733)
[»] scaffold0111 (1 HSPs)
scaffold0111 (13-88)||(43642-43717)
[»] chr7 (1 HSPs)
chr7 (21-88)||(12161157-12161224)
[»] chr6 (1 HSPs)
chr6 (21-88)||(15157168-15157235)
[»] scaffold0416 (1 HSPs)
scaffold0416 (13-90)||(12452-12529)
[»] chr1 (1 HSPs)
chr1 (13-82)||(21490208-21490277)
[»] chr5 (1 HSPs)
chr5 (177-217)||(36421201-36421241)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 72 - 392
Target Start/End: Original strand, 7037478 - 7037798
Alignment:
Q  72 ccattcaccaaaatagaaattgacgttgtcttcaagcattttaagatccatttccttcatgtttcatgaaaccccatttcaacatgacaaagtcaggaaa 171  Q
    |||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7037478 ccattcgccaatatggaaattgacgttgtcttcaagcattttaagatccatttccttcatgtttcatgaaaccccatttcaacatgacaaagtcaggaaa 7037577  T
Q  172 tttcaatcaactaagtcatacgccttttcgaagtctactttaaacatgagcacttcttttttctacctttttgcctcatccataatttctttagctataa 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7037578 tttcaatcaactaagtcatacgccttttcgaagtctactttaaacatgagcacttcttttttctacctttttgcctcatccataatttctttagctataa 7037677  T
Q  272 ggatcctatccaaaaatattctaccgaatatgaaagccaactgtgtctctgatatgactgtaccgggtaccttttctaatatattagccaacacttttgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7037678 ggatcctatccaaaaatattctaccgaatatgaaagccaactgtgtctctgatatgactgtaccggttaccttttctaatatattagccaacacttttgc 7037777  T
Q  372 taaaaccttgtagatacacac 392  Q
    |||||||||||||||||||||    
T  7037778 taaaaccttgtagatacacac 7037798  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 19178181 - 19178112
Alignment:
Q  21 gggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaa 90  Q
    ||||| ||||| |||||||| || || ||||| || |||||||| | |||||||||||||||||||||||    
T  19178181 gggtctccttgacggacaccgcgggagcaagaaaagaaacccaccgccttaccattcaccaaaatagaaa 19178112  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 10708422 - 10708499
Alignment:
Q  13 gagataaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaa 90  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10708422 gagataaagggtcaccttgtcggacactacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaa 10708499  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 10922192 - 10922269
Alignment:
Q  13 gagataaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaa 90  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10922192 gagataaagggtcaccttgtcggacactacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaa 10922269  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 54164030 - 54163994
Alignment:
Q  181 actaagtcatacgccttttcgaagtctactttaaaca 217  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  54164030 actaaatcatacgccttttcgaagtcaactttaaaca 54163994  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 41247873 - 41247950
Alignment:
Q  13 gagataaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaa 90  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41247873 gagataaagggtcaccttgtcagacaccacgagaacaagagaaaaaacccactgtcttaccattcaccaaaatagaaa 41247950  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 44377922 - 44377847
Alignment:
Q  13 gagataaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaataga 88  Q
    ||||||||||||| ||||| || ||||||||   ||||||||| |||||||| |  || |||||||||||||||||    
T  44377922 gagataaagggtctccttgacgaacaccacggacacaagagaagaaacccaccgctttgccattcaccaaaataga 44377847  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 44393502 - 44393427
Alignment:
Q  13 gagataaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaataga 88  Q
    ||||||||||||| ||||| || ||||||||   ||||||||| |||||||| |  || |||||||||||||||||    
T  44393502 gagataaagggtctccttgacgaacaccacggacacaagagaagaaacccaccgctttgccattcaccaaaataga 44393427  T

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Target: scaffold0093 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 13733 - 13658
Alignment:
Q  13 gagataaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaataga 88  Q
    |||||| |||||| |||||  | ||||||||||| ||||||||||||||||||| ||| |||||||| ||||||||    
T  13733 gagatagagggtctccttgatgcacaccacgagagcaagagaaaaaacccactgcctttccattcactaaaataga 13658  T

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Target: scaffold0111 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 43642 - 43717
Alignment:
Q  13 gagataaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaataga 88  Q
    |||||| |||||| || |||||||| ||||||||||||  ||| || ||||||| ||||||||||||||| |||||    
T  43642 gagatagagggtccccctgtcggactccacgagaacaattgaagaatcccactgccttaccattcaccaagataga 43717  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 12161224 - 12161157
Alignment:
Q  21 gggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaataga 88  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||| |  ||  ||||||||||||||||    
T  12161224 gggtctccttgtcgaacaccacaagaacaagagaaaaaacccaccgcttttgcattcaccaaaataga 12161157  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 15157235 - 15157168
Alignment:
Q  21 gggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaataga 88  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||| |  ||  ||||||||||||||||    
T  15157235 gggtctccttgtcgaacaccacaagaacaagagaaaaaacccaccgcttttgcattcaccaaaataga 15157168  T

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Target: scaffold0416 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 12529 - 12452
Alignment:
Q  13 gagataaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaa 90  Q
    ||||||||||||| ||||| || ||||||||   ||||||||| || ||||  | ||| |||||||||||||||||||    
T  12529 gagataaagggtccccttgacgaacaccacggacacaagagaagaaccccagcgccttgccattcaccaaaatagaaa 12452  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 21490208 - 21490277
Alignment:
Q  13 gagataaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaa 82  Q
    ||||||||||||| || | |||||| || |||||||||  ||| || ||||||| |||||||||||||||    
T  21490208 gagataaagggtccccctatcggactccccgagaacaattgaagaatcccactgccttaccattcaccaa 21490277  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 36421201 - 36421241
Alignment:
Q  177 atcaactaagtcatacgccttttcgaagtctactttaaaca 217  Q
    ||||||| | |||||||||||||||||||| ||||||||||    
T  36421201 atcaactgaatcatacgccttttcgaagtcaactttaaaca 36421241  T

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