View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13055_low_15 (Length: 387)
Name: NF13055_low_15
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_15 |
 | |
|
| [»] scaffold0543 (1 HSPs) |
| | |
|
| [»] scaffold0492 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 368
Target Start/End: Original strand, 49971834 - 49972191
Alignment:
| Q |
9 |
gaacaatatctgggtcctcccaatgtgccctgcataannnnnnncctttatgattttcatcgaaattgagaatgagttgcgagaagaagagaatgattgt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49971834 |
gaacaatatctgggtcctcccaatgtgccctgcataatttttttcctttatgattttcatcgaaattgagaatgagttgcgagaagaagaggatgattgt |
49971933 |
T |
|
| Q |
109 |
gacggcggcattttaggtaggaagaaaagaaagaatgtgaataagaagtgaatctgggagagcactgattctgnnnnnnnnnnnnnnnnnnngaattgga |
208 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49971934 |
gacggcggcatttttggtaggaagaaaagaaagaatgtgaataagaagtgaatctgggagagcactgattctgtcttcttcttctt------gaattgga |
49972027 |
T |
|
| Q |
209 |
attgaatgtcctagccgccggggggacatgattattgcaatatcatatgactcttgataagagtata----taaagaagagtcactcctcatcatacaaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49972028 |
attgaatgtcctagccgccggggggacatgattattgcaatatcatatgactcttgataagagtatatatataaagaagagtcactcctcatcatacaaa |
49972127 |
T |
|
| Q |
305 |
tcaattttcttctttatgtcttgcaactccctaacaatatatccctaacttgtcttgcaagtac |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49972128 |
tcaattttcttctttatgtcttgcaactccctaacaatatatccctaacttgtcttgcatgtac |
49972191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 3910 - 3963
Alignment:
| Q |
128 |
ggaagaaaagaaagaatgtgaataagaagtgaatctgggagagcactgattctg |
181 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || ||||||||||||||| |
|
|
| T |
3910 |
ggaagaaaagaaagaatgtgataaagaagtgaatccggtagagcactgattctg |
3963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 5456 - 5509
Alignment:
| Q |
128 |
ggaagaaaagaaagaatgtgaataagaagtgaatctgggagagcactgattctg |
181 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || ||||||||||||||| |
|
|
| T |
5456 |
ggaagaaaagaaagaatgtgataaagaagtgaatccggtagagcactgattctg |
5509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 43288293 - 43288339
Alignment:
| Q |
257 |
gactcttgataagagtatataaagaagagtcactcctcatcatacaa |
303 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||||||||| ||||| |
|
|
| T |
43288293 |
gactcttgataagagtttataaagaggaggcactcctcatcttacaa |
43288339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 8902382 - 8902424
Alignment:
| Q |
253 |
atatgactcttgataagagtatataaagaagagtcactcctca |
295 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
8902382 |
atatgactcttgataagagtttataaagatgagacactcctca |
8902424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 10542137 - 10542092
Alignment:
| Q |
258 |
actcttgataagagtatataaagaagagtcactcctcatcatacaa |
303 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||| ||||| |
|
|
| T |
10542137 |
actcttgataagagtttataaagaggagacactcctcatcttacaa |
10542092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University