View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13055_low_16 (Length: 372)
Name: NF13055_low_16
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 16578635 - 16578996
Alignment:
| Q |
1 |
cacccggttcaaaaaacaaaccaaaaccaccaatcttcgtaacaagagacagtccaaattcactgaaaagccatgtgatggaagtatcctccggagcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16578635 |
cacccggttcaaaaaacaaaccaaaaccaccaatcttcgtaacaagagacagtccaaattcactgaaaagccatgtgatggaagtatcctccggagcaga |
16578734 |
T |
|
| Q |
101 |
tgtagccgaaagtgtagcccagtttgcaagaaggcgacaacgcggggtttgtgttctaagcggtagtggatcagttgcaaatgttacccttagacaacca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16578735 |
tgtagccgaaagtgtagcccagtttgcaagaaggcgacaacgcggggtttgtgttctaagcggtagtggatcagttgcaaatgttacccttagacaacct |
16578834 |
T |
|
| Q |
201 |
gcagcaccaggagctgttgtagcacttcatggaaggtttgatattctatcgttaaccggagcttttctaccgggacctgctcctccaggcgcaaccggac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16578835 |
gcagcaccaggagctgttgtagcacttcatggaaggtttgatattctatcattaaccggagcttttctaccaggacctgctcctccaggcgcaaccggac |
16578934 |
T |
|
| Q |
301 |
taacagtgtacttagccggtggacaagggcaagttgttggtggaagtgttgttggacctttg |
362 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16578935 |
tcacagtgtacttagccggtggacaagggcaagttgttggtggaagtgttgttggacctttg |
16578996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 356
Target Start/End: Complemental strand, 32803249 - 32802905
Alignment:
| Q |
12 |
aaaaacaaaccaaaaccaccaatcttcgtaacaagagacagtccaaattcactgaaaagccatgtgatggaagtatcctccggagcagatgtagccgaaa |
111 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||||||||| || |||||| | |||| |||||||| ||||| ||| || ||||| ||| |||| |||| |
|
|
| T |
32803249 |
aaaaacagaccaaaaccacctatctttgtaacaagagatagcccaaatgctttgaagagccatgtcatggaggtagccggtggagctgatatagcagaaa |
32803150 |
T |
|
| Q |
112 |
gtgtagcccagtttgcaagaaggcgacaacgcggggtttgtgttctaagcggtagtggatcagttgcaaatgttacccttagacaaccagcagcaccagg |
211 |
Q |
| |
|
||||||| || || ||||| ||||| |||||||| ||||||||||| || || ||||| || || || |||||||| ||||||||||| |||| || || |
|
|
| T |
32803149 |
gtgtagcacaattcgcaaggaggcgtcaacgcggtgtttgtgttctcagtggaagtggctctgtagctaatgttactcttagacaaccttcagctcctgg |
32803050 |
T |
|
| Q |
212 |
agctgttgtagcacttcatggaaggtttgatattctatcgttaaccggagcttttctaccgggacctgctcctccaggcgcaaccggactaacagtgtac |
311 |
Q |
| |
|
|| ||||||||||||||||| |||||||| ||| | || |||||||| | |||||||| || |||||||| ||||| |||| || || ||||||||| |
|
|
| T |
32803049 |
tgccgttgtagcacttcatggcaggtttgagattttgtccttaaccgggacatttctacctggtcctgctccaccaggttcaactggtcttacagtgtac |
32802950 |
T |
|
| Q |
312 |
ttagccggtggacaagggcaagttgttggtggaagtgttgttgga |
356 |
Q |
| |
|
| || || || || || || |||||||| || ||||||||||| |
|
|
| T |
32802949 |
ctggctggaggtcagggccaggttgttggaggttgtgttgttgga |
32802905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 35465572 - 35465529
Alignment:
| Q |
6 |
ggttcaaaaaacaaaccaaaaccaccaatcttcgtaacaagaga |
49 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
35465572 |
ggttcaaaaaacaaaccaaaaccaccaatattcataacaagaga |
35465529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 3332105 - 3332062
Alignment:
| Q |
312 |
ttagccggtggacaagggcaagttgttggtggaagtgttgttgg |
355 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3332105 |
ttagcgggcggacaagggcaggttgttggtggaagtgttgttgg |
3332062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University