View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13055_low_17 (Length: 361)
Name: NF13055_low_17
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 31504308 - 31504076
Alignment:
| Q |
12 |
actgcatggttggatagagcaacagtcaacagataacttacggcttgttatcttgtaatttggccactaannnnnnnaatcttatcgttccatccacgta |
111 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31504308 |
actgcacggttagatagagcaacattcaacagataacttacggcttgttatcttgtaatttggccactaatttttttaatcttatcgttccatccacgta |
31504209 |
T |
|
| Q |
112 |
agcgctctcaaccgaggagtactggtcagtcctcacccaaagaattacgtatgctttctgttgggcagagcacaaataagaaattgaatcatcaatga-- |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31504208 |
agcgctctcaaccgaggagtactggtcagtcctcacccaaagaattacgtatgctttctgttgggcagagcacaaataagaaattgaatcatcaatgaag |
31504109 |
T |
|
| Q |
210 |
------agtaatgaatgaggccatcattatcac |
236 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
31504108 |
tattgaagtaatgaatgaggccatcattatcac |
31504076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 34498424 - 34498656
Alignment:
| Q |
12 |
actgcatggttggatagagcaacagtcaacagataacttacggcttgttatcttgtaatttggccactaannnnnnnaatcttatcgttccatccacgta |
111 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
34498424 |
actgcatggttagatagagcaacattcaacagataacttacagcttgttatcttgtaatttggccactaatttttttaatcttactgttccatccacgta |
34498523 |
T |
|
| Q |
112 |
agcgctctcaaccgaggagtactggtcagtcctcacccaaagaattacgtatgctttctgttgggcagagcacaaataagaaattgaatcatcaa----- |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34498524 |
agcgctctcaaccgaggagtactgatcagtcctcacccaaagaattacgtatgctttctgttgggcagaacacaaataagaaattgaatcatcaatgaag |
34498623 |
T |
|
| Q |
207 |
---tgaagtaatgaatgaggccatcattatcac |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34498624 |
tattgaagtaatgaatgaggccatcattatcac |
34498656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 27609956 - 27610188
Alignment:
| Q |
12 |
actgcatggttggatagagcaacagtcaacagataacttacggcttgttatcttgtaatttggccactaannnnnnnaatcttatcgttccatccacgta |
111 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
27609956 |
actgcatggttagatagagcaacattcaacagataacttacagcttgttatcttgtaatttggccactaatttttttaatcttattgttccatccacgta |
27610055 |
T |
|
| Q |
112 |
agcgctctcaaccgaggagtactggtcagtcctcacccaaagaattacgtatgctttctgttgggcagagcacaaataagaaattgaatcatcaa----- |
206 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
27610056 |
agctctctcaaccgaggagtactgatcagtcctcacccaaagaattacgtatgctttctgttgggtagaacacaaataagaaattgaatcatcaatgaag |
27610155 |
T |
|
| Q |
207 |
---tgaagtaatgaatgaggccatcattatcac |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27610156 |
tattgaagtaatgaatgaggccatcattatcac |
27610188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 27610232 - 27610304
Alignment:
| Q |
280 |
tttgagacacaaaaatgttgacttaatatccaatggattccgtatcagtgctcagtaaaaatttcatctctgc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27610232 |
tttgagacacaaaaatgttgacttaatatccaatggattccgtatcggtgctcagtaaaaatttcatctctgc |
27610304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 34498700 - 34498772
Alignment:
| Q |
280 |
tttgagacacaaaaatgttgacttaatatccaatggattccgtatcagtgctcagtaaaaatttcatctctgc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34498700 |
tttgagacacaaaaatgttgacttaatatccaatggattccgtatcggtgctcagtaaaaatttcatctctgc |
34498772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 31504032 - 31503961
Alignment:
| Q |
280 |
tttgagacacaaaaatgttgacttaatatccaatggattccgtatcagtgctcagtaaaaatttcatctctg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31504032 |
tttgagacacaaaaatgttgacttaatatccaatggattccatatcagtgctcagtaaaaatttcatctctg |
31503961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University