View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13055_low_2 (Length: 915)

Name: NF13055_low_2
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13055_low_2
NF13055_low_2
[»] chr7 (30 HSPs)
chr7 (15-904)||(12328014-12328903)
chr7 (17-540)||(12407394-12407918)
chr7 (47-540)||(12391559-12392053)
chr7 (599-744)||(39465290-39465437)
chr7 (600-742)||(24034337-24034483)
chr7 (651-775)||(29447116-29447244)
chr7 (600-722)||(29693291-29693417)
chr7 (611-870)||(1460552-1460823)
chr7 (607-726)||(22701796-22701916)
chr7 (628-683)||(3433498-3433553)
chr7 (628-730)||(48103176-48103279)
chr7 (433-514)||(662792-662873)
chr7 (433-514)||(15970796-15970877)
chr7 (825-878)||(39465182-39465235)
chr7 (643-686)||(23162273-23162316)
chr7 (433-514)||(39786286-39786367)
chr7 (148-215)||(1811740-1811807)
chr7 (650-689)||(5800672-5800711)
chr7 (651-689)||(9412582-9412620)
chr7 (643-689)||(10199378-10199424)
chr7 (819-877)||(24034164-24034222)
chr7 (643-689)||(38175209-38175255)
chr7 (648-686)||(48525824-48525862)
chr7 (607-712)||(7809799-7809904)
chr7 (430-463)||(14553787-14553820)
chr7 (430-463)||(15994895-15994928)
chr7 (648-689)||(16683362-16683403)
chr7 (648-689)||(17657598-17657639)
chr7 (433-514)||(19008659-19008740)
chr7 (250-294)||(19307474-19307516)
[»] chr5 (15 HSPs)
chr5 (600-875)||(43101507-43101794)
chr5 (607-744)||(35583127-35583267)
chr5 (616-724)||(30841067-30841180)
chr5 (610-698)||(25536627-25536710)
chr5 (643-686)||(42207746-42207789)
chr5 (628-689)||(8943415-8943477)
chr5 (651-720)||(26620828-26620897)
chr5 (649-689)||(8990241-8990281)
chr5 (649-689)||(35627362-35627402)
chr5 (651-698)||(40493789-40493835)
chr5 (651-689)||(5776623-5776661)
chr5 (651-689)||(19288912-19288950)
chr5 (651-689)||(38455586-38455624)
chr5 (433-462)||(18524624-18524653)
chr5 (433-514)||(38099058-38099139)
[»] chr8 (23 HSPs)
chr8 (599-744)||(16822407-16822551)
chr8 (609-876)||(32344907-32345195)
chr8 (609-876)||(32361515-32361803)
chr8 (609-726)||(9187569-9187685)
chr8 (620-698)||(2079415-2079496)
chr8 (819-878)||(9187773-9187832)
chr8 (668-721)||(37370114-37370167)
chr8 (619-686)||(15919658-15919727)
chr8 (619-689)||(24852369-24852439)
chr8 (640-688)||(1526232-1526280)
chr8 (430-462)||(15919864-15919896)
chr8 (646-685)||(29037606-29037645)
chr8 (651-689)||(1759663-1759701)
chr8 (643-689)||(7019871-7019917)
chr8 (651-689)||(24688553-24688591)
chr8 (651-689)||(36343048-36343086)
chr8 (651-689)||(43921884-43921922)
chr8 (652-689)||(8514249-8514286)
chr8 (652-689)||(8515940-8515977)
chr8 (652-689)||(8518019-8518056)
chr8 (652-689)||(8519723-8519760)
chr8 (433-514)||(9187314-9187395)
chr8 (652-689)||(36342523-36342560)
[»] chr4 (18 HSPs)
chr4 (668-877)||(24637910-24638128)
chr4 (607-715)||(42398400-42398510)
chr4 (599-726)||(54983289-54983418)
chr4 (169-377)||(3545177-3545383)
chr4 (668-726)||(19545664-19545722)
chr4 (651-736)||(49320132-49320217)
chr4 (628-689)||(10250640-10250703)
chr4 (640-698)||(2478539-2478596)
chr4 (643-689)||(46620742-46620788)
chr4 (433-506)||(4609124-4609197)
chr4 (480-514)||(10250347-10250381)
chr4 (651-689)||(20702281-20702319)
chr4 (651-689)||(21796226-21796264)
chr4 (651-689)||(33144971-33145009)
chr4 (643-689)||(37830851-37830897)
chr4 (651-689)||(38364963-38365001)
chr4 (433-514)||(2011953-2012034)
chr4 (433-462)||(29656369-29656398)
[»] scaffold0013 (1 HSPs)
scaffold0013 (610-744)||(101546-101680)
[»] chr2 (15 HSPs)
chr2 (633-744)||(31555471-31555585)
chr2 (607-726)||(17827517-17827638)
chr2 (628-721)||(17822533-17822632)
chr2 (604-726)||(17873157-17873283)
chr2 (818-878)||(31555361-31555421)
chr2 (428-521)||(25915424-25915518)
chr2 (644-689)||(20973888-20973933)
chr2 (643-689)||(963372-963417)
chr2 (651-689)||(12413205-12413243)
chr2 (651-689)||(12425265-12425303)
chr2 (643-689)||(19063780-19063826)
chr2 (433-514)||(16039096-16039177)
chr2 (607-644)||(17874531-17874568)
chr2 (429-462)||(27360684-27360717)
chr2 (644-689)||(40301722-40301767)
[»] chr3 (22 HSPs)
chr3 (632-726)||(21967721-21967817)
chr3 (632-726)||(21990157-21990253)
chr3 (128-377)||(5216869-5217114)
chr3 (674-721)||(13475321-13475368)
chr3 (668-726)||(297781-297838)
chr3 (672-726)||(21082794-21082848)
chr3 (434-514)||(29626065-29626145)
chr3 (435-514)||(17438985-17439064)
chr3 (602-718)||(14770732-14770850)
chr3 (650-686)||(38277871-38277907)
chr3 (649-689)||(41923253-41923293)
chr3 (431-462)||(18956709-18956740)
chr3 (651-689)||(1149469-1149507)
chr3 (651-689)||(5492631-5492669)
chr3 (651-689)||(5812210-5812248)
chr3 (651-689)||(19592269-19592307)
chr3 (643-689)||(21495474-21495520)
chr3 (651-689)||(27947668-27947706)
chr3 (651-689)||(35379790-35379828)
chr3 (651-689)||(49758510-49758548)
chr3 (651-689)||(50483713-50483751)
chr3 (607-656)||(13475391-13475440)
[»] chr1 (25 HSPs)
chr1 (600-726)||(48420486-48420616)
chr1 (600-842)||(27579102-27579354)
chr1 (779-873)||(25221995-25222087)
chr1 (433-523)||(23773603-23773694)
chr1 (600-718)||(43879987-43880111)
chr1 (672-726)||(32591162-32591216)
chr1 (753-842)||(43880116-43880210)
chr1 (609-712)||(15474997-15475103)
chr1 (608-659)||(25182584-25182635)
chr1 (643-689)||(15470361-15470407)
chr1 (430-522)||(25182804-25182897)
chr1 (600-641)||(44066490-44066531)
chr1 (427-511)||(17503938-17504022)
chr1 (643-689)||(5880912-5880958)
chr1 (651-689)||(11407203-11407241)
chr1 (651-689)||(12214914-12214952)
chr1 (651-689)||(16143561-16143599)
chr1 (651-689)||(27307773-27307811)
chr1 (651-689)||(32306857-32306895)
chr1 (651-689)||(34748745-34748783)
chr1 (651-689)||(37298187-37298225)
chr1 (651-689)||(43577597-43577635)
chr1 (696-726)||(44065302-44065332)
chr1 (651-689)||(47402907-47402945)
chr1 (707-744)||(25182519-25182556)
[»] chr6 (15 HSPs)
chr6 (610-711)||(14912013-14912115)
chr6 (608-726)||(19707331-19707452)
chr6 (600-726)||(4965467-4965602)
chr6 (428-522)||(23124173-23124268)
chr6 (814-876)||(4115756-4115818)
chr6 (427-514)||(12170158-12170245)
chr6 (640-686)||(28548613-28548659)
chr6 (643-689)||(33573258-33573304)
chr6 (815-878)||(14911904-14911967)
chr6 (651-689)||(3103799-3103837)
chr6 (651-689)||(3833990-3834028)
chr6 (678-745)||(4115623-4115692)
chr6 (619-686)||(13846919-13846982)
chr6 (651-689)||(26253058-26253096)
chr6 (651-689)||(28712093-28712131)
[»] scaffold0092 (2 HSPs)
scaffold0092 (600-736)||(6671-6808)
scaffold0092 (788-878)||(6845-6934)
[»] scaffold0707 (1 HSPs)
scaffold0707 (643-689)||(488-534)
[»] scaffold0031 (1 HSPs)
scaffold0031 (640-689)||(47316-47365)
[»] scaffold0014 (1 HSPs)
scaffold0014 (433-514)||(15592-15673)
[»] scaffold1944 (1 HSPs)
scaffold1944 (643-687)||(331-375)
[»] scaffold1790 (1 HSPs)
scaffold1790 (643-687)||(472-516)
[»] scaffold0029 (1 HSPs)
scaffold0029 (615-698)||(73262-73344)
[»] scaffold0196 (1 HSPs)
scaffold0196 (643-689)||(9303-9349)
[»] scaffold0106 (1 HSPs)
scaffold0106 (651-689)||(26690-26728)
[»] scaffold1017 (1 HSPs)
scaffold1017 (609-692)||(2222-2307)


Alignment Details
Target: chr7 (Bit Score: 774; Significance: 0; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 15 - 904
Target Start/End: Complemental strand, 12328903 - 12328014
Alignment:
Q  15 cgttcatctcaataggatgtctcacatctgtgcacaataacctttacgacatttaccaacagtccccannnnnnnnggacaatccttatctgttctacaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  12328903 cgttcatctcaataggatgtctcacatctgtgcacaataacctttacgacatttaccaacagtccccattttttttggacaatccttatctgttctacaa 12328804  T
Q  115 ggaattggcattaagggaaaggaagaaatagacactatcatggcaagaaatattgaaagcaataaaatcggaacataaataaactttagggtttcaacca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12328803 ggaattggcattaagggaaaggaagaaatagacactatcatggcaagaaatattgaaagcaataaaatcggaacataaataaactttagggtttcaacca 12328704  T
Q  215 tatcttttgctctataatttttatataacagatagtatatgatttgatctctttatatagtgtataaattttatggtctcgtaaaaatgatcaaatagtt 314  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12328703 tatctttcgctctataatttttatataatagatagtatatgatttgatctctttatatagtgtataaattttatggtctcgtaaaaatgatcaaatagtt 12328604  T
Q  315 taagttttttcattaacccatcataaaattaaaatatttatcaagtgtctcttaggtatatcatttgtttttgtccctttatccttcataggaaagaggc 414  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  12328603 taagttttttcattaacccatcataaaattaaaatattcatcaagtgtctcttaggtatatcatttgtttttgtccctttatccctcacaggaaagaggc 12328504  T
Q  415 aagatgataaacttaatttatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12328503 aagatgataaacttaatttatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccctcaactttcaa 12328404  T
Q  515 acaaatagataagagtaaattcaaatataatggatgagagtgaatccaaatattnnnnnnnntgtaacaaacacaannnnnnnnattaccatacaaaata 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||        ||||||||||||||||    
T  12328403 acaaatagataagagtaaattcaaatataatggatgagagtgaatccaaatattaaaaaaaatgtcacaaacacaattttttttattaccatacaaaata 12328304  T
Q  615 tatcatgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatatgtcactataaatataa 714  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12328303 tatcatgtaacatacacgatatgagtatatgtccaattttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatatgtcactataaatataa 12328204  T
Q  715 tcaataagaaaaggataattatcatcgatatgagttaaatattttcaaaggaacaattagagagtagtgacaattatcatattcatcctctcaaagttaa 814  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  12328203 tcaataagaaaaggataattatcatcgatatgagttaaatattttcaaaggaacaattagagagtagtgactcttatcatattcatcctctcaaagttaa 12328104  T
Q  815 gtcctcttaacatatgtgagataaaataactattcttggatcattgattatggaatcaagttgcaaaagaacttgattcatgttcgctct 904  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12328103 gtcctcttaacatatgtgagataaaataactattcttggatcattgattatggaatcaagttgcaaaagaacttgattcatgttctctct 12328014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 540
Target Start/End: Original strand, 12407394 - 12407918
Alignment:
Q  17 ttcatctcaataggatgtctcacatctgtgcacaataacctttacgacatttaccaacagtccccannnnnnnnggacaatccttatctgttctacaagg 116  Q
    ||||||||| ||| |||| ||| |||  | ||||||||||||| |||||||||||||||  |||          ||||||||||||||||||  ||||||    
T  12407394 ttcatctcagtagaatgtttcagatccctacacaataacctttgcgacatttaccaacatacccattttttttaggacaatccttatctgttagacaagg 12407493  T
Q  117 aattggcattaagggaaaggaagaaatagacactatcatggcaagaaatattgaaagcaataaaatcggaacataaataaactttagggtttcaaccata 216  Q
    ||||||||| || ||||| |||||| | || |||||||||||||||||||||||||| |||| | ||  ||||| || ||||||||| ||||||||||||    
T  12407494 aattggcataaaaggaaatgaagaagtggatactatcatggcaagaaatattgaaagaaatacactcaaaacatgaacaaactttagagtttcaaccata 12407593  T
Q  217 tcttttgctctataatttttatataacagatagtatatgatttgatctctttatatagtgtataaattttatggtctcgtaaaaatgatcaaatagttta 316  Q
    ||||||  | |||||||||||||||||||||| ||||| ||||||||||||  ||||||||| ||||| |||||||||||||||||||||||||||| ||    
T  12407594 tcttttcgtttataatttttatataacagataatatattatttgatctctt--tatagtgtaaaaattctatggtctcgtaaaaatgatcaaatagtata 12407691  T
Q  317 agttttttcattaacccatcataaaattaaaatatttatcaagtgtctcttaggtatatcat---ttgtttttgtccctttatccttcataggaaagagg 413  Q
    || ||||| | |||| |||| |||||||| || | | |||||||||||||||||||||||||   |||||||||||||||||||  ||||||||||||||    
T  12407692 agattttttaataactcatcctaaaattagaacaatcatcaagtgtctcttaggtatatcatatgttgtttttgtccctttatcactcataggaaagagg 12407791  T
Q  414 caagatgataaacttaatttatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttca 513  Q
    |||||| ||||||||||| |||| |||||||| ||||||||| |||||| || |||||| ||||| ||||||||  | |||||| |||  ||||| ||||    
T  12407792 caagataataaacttaatatatattatatatacagaaaataatctctttcgactcttttgagttgcctttttcttcttccaaaactactctcaaccttca 12407891  T
Q  514 aacaaatagataagagtaaattcaaat 540  Q
    |||||||||||||  ||||||| ||||    
T  12407892 aacaaatagataattgtaaattgaaat 12407918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 47 - 540
Target Start/End: Original strand, 12391559 - 12392053
Alignment:
Q  47 cacaataacctttacgacatttaccaacagtccccannnnnnnnggacaatccttatctgttctacaaggaattggcattaagggaaaggaagaaataga 146  Q
    |||||||||||||||||||||||||||||  |||          |||||||||||||||||| ||||||||| ||| ||  ||||||| |||||| | ||    
T  12391559 cacaataacctttacgacatttaccaacaaacccgtttcttttaggacaatccttatctgttatacaaggaaatggtatacagggaaatgaagaagtgga 12391658  T
Q  147 cactatcatggcaagaaatattgaaagcaataaaatcggaacataaataaactttagggtttcaaccatatcttttgctctataatttttatataacaga 246  Q
     ||||||| |||||||||||||||||| |||| | ||  |||||||| ||||||||| |||||||||||||||||  || |||||||| |||||||||||    
T  12391659 tactatcacggcaagaaatattgaaagaaatacattcaaaacataaacaaactttagagtttcaaccatatctttccctttataatttgtatataacaga 12391758  T
Q  247 tagtatatgatttgatctctttatatagtgtataaattttatggtctcgtaaaaatgatcaaatagtttaagttttttcattaacccatcataaaattaa 346  Q
    || ||||||||||||||||||  ||||||||| |||||| ||| |||||||||||||||| |||||| |||| ||||| | |||| |||| ||||||||     
T  12391759 taatatatgatttgatctctt--tatagtgtaaaaatttcatgctctcgtaaaaatgatcgaatagtataagattttttaataactcatcctaaaattag 12391856  T
Q  347 aatatttatcaagtgtctcttaggtatatcat---ttgtttttgtccctttatccttcataggaaagaggcaagatgataaacttaatttatactatata 443  Q
    || | | |||||||||||||||||||||||||   |||||||||||||||||||  |||||||||||||||||||| | ||||||||| |||| ||||||    
T  12391857 aacaatcatcaagtgtctcttaggtatatcatatgttgtttttgtccctttatcactcataggaaagaggcaagataaaaaacttaatatatattatata 12391956  T
Q  444 taaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaaacaaatagataagagtaaattcaaat 540  Q
    || ||||||||| |||||| || ||| || ||||| ||||||||  | ||||||||||  ||||| |||||||||||||||||  ||||||| ||||    
T  12391957 tacagaaaataatctctttcgactctatttagttgcctttttcttcttccaaaattactctcaaccttcaaacaaatagataattgtaaattgaaat 12392053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 599 - 744
Target Start/End: Complemental strand, 39465437 - 39465290
Alignment:
Q  599 attaccatacaaaatatatcatgtaacatacacgatatgagtatatgtccagtttttt-cctttgtcattaaaaaa-gtgtaacaaactagatcaaatat 696  Q
    ||||||| | |||||||||  ||||||| | |||||||||||||||||| | |||||| ||||| ||||||||||| |||||||||| || |||||||||    
T  39465437 attaccacataaaatatattgtgtaacaaatacgatatgagtatatgtcaaatttttttcctttatcattaaaaaaagtgtaacaaattaaatcaaatat 39465338  T
Q  697 atgtcactataaatataatcaataagaaaaggataattatcatcgata 744  Q
    ||||||||||||||||| ||||||||||||| | ||||| ||||||||    
T  39465337 atgtcactataaatatactcaataagaaaagaaaaattagcatcgata 39465290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 600 - 742
Target Start/End: Complemental strand, 24034483 - 24034337
Alignment:
Q  600 ttaccatacaaaatatatcatgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaaaaaa----gtgtaacaaactagatcaaata 695  Q
    ||||||| ||||||||||||| |||||  |||  ||||||||||| || | ||||||| ||| || ||||||||    ||||||||||| ||||||||||    
T  24034483 ttaccatgcaaaatatatcatttaacaaccacattatgagtatatatcgaattttttcatttatctttaaaaaaaaaagtgtaacaaaccagatcaaata 24034384  T
Q  696 tatgtcactataaatataatcaataagaaaaggataattatcatcga 742  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||    
T  24034383 tatgtcactataaatataatcaataaaaaaagaaaaattatcatcga 24034337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 651 - 775
Target Start/End: Original strand, 29447116 - 29447244
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatatgtcactataaatataatcaataagaaaaggataattatcatcgata---tga 747  Q
    |||||||||||  |  |||||||  |||| |||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| ||||   |||    
T  29447116 ttttttcctttacccataaaaaaaagtaataaactagatcaagtatatgtcactataaatataatcaataagaaaatgaaaattatcattgatacattga 29447215  T
Q  748 g-ttaaatattttcaaaggaacaattaga 775  Q
    | | |||||||||||||||| ||||||||    
T  29447216 gataaaatattttcaaaggagcaattaga 29447244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 600 - 722
Target Start/End: Original strand, 29693291 - 29693417
Alignment:
Q  600 ttaccatacaaaatatatcatgtaacatacacgatatgagtatatgtccagttttttc-ctttgtcatt---aaaaaagtgtaacaaactagatcaaata 695  Q
    |||||| |||||||||||| ||||||| ||||||||||| ||||  |  | ||||||  |||| || ||   ||||||||||||||||||||| ||||||    
T  29693291 ttaccacacaaaatatatcgtgtaacaaacacgatatgaatatacctttaattttttttctttatccttgaaaaaaaagtgtaacaaactagaccaaata 29693390  T
Q  696 tatgtcactataaatataatcaataag 722  Q
    ||| |||||||||||||||||||||||    
T  29693391 tatatcactataaatataatcaataag 29693417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 611 - 870
Target Start/End: Original strand, 1460552 - 1460823
Alignment:
Q  611 aatatatcatgtaacatacacgatatgagtatatgtccagtt-ttttcctttgtcatta--aaaaagtgtaacaaactagat---caaatatatgtcact 704  Q
    |||||||| || ||||  |||| ||||| |||||||||| || ||||| ||| || |||  |||||||||||||||||||||   ||| |||||||||||    
T  1460552 aatatatcgtgcaacaatcacgctatgaatatatgtccaattattttcttttatctttagaaaaaagtgtaacaaactagatgatcaagtatatgtcact 1460651  T
Q  705 ataaatataatcaataagaaaaggataattatcatcgata---tgag-ttaaatattttcaaaggaacaattagagag-----tagtgacaattatcata 795  Q
    ||||||||||||   |||||||||| |||||||||  |||   |||| | ||| | ||||||| || |||||||||||     |||||||  ||| ||||    
T  1460652 ataaatataatc---aagaaaaggaaaattatcattcatacactgagataaaaaaatttcaaatgagcaattagagagtaaaatagtgactcttaacata 1460748  T
Q  796 ttcatcctctcaaagttaagtcctcttaacatatgtgagataaaataactattcttggatcattgattatggaat 870  Q
    |||||||||| |||| || ||||   |||||| ||||||||| ||||  |||||||  |||||||||||| ||||    
T  1460749 ttcatcctcttaaaggtatgtcccactaacatgtgtgagatacaatatttattcttttatcattgattatagaat 1460823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 607 - 726
Target Start/End: Original strand, 22701796 - 22701916
Alignment:
Q  607 acaaaatatatcatgtaacatacacgatatgagtatatgtccag-ttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatatgtcacta 705  Q
    |||||||||||| ||||||| |||||||  ||||||  ||| || |||||| |||| || |||||||| ||||| |||| ||||||| ||| |||||||     
T  22701796 acaaaatatatcgtgtaacaaacacgatgcgagtatgcgtcgagctttttttctttatccttaaaaaaatgtaaaaaacaagatcaagtatgtgtcactg 22701895  T
Q  706 taaatataatcaataagaaaa 726  Q
    ||||||||||||||| |||||    
T  22701896 taaatataatcaataggaaaa 22701916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 628 - 683
Target Start/End: Original strand, 3433498 - 3433553
Alignment:
Q  628 acacgatatgagtatatgtccagttttttcctttgtcattaaaaaagtgtaacaaa 683  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  3433498 acactatatgagtatatgtccagttttttcctttatcatttaaaaagtgtaacaaa 3433553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 628 - 730
Target Start/End: Original strand, 48103176 - 48103279
Alignment:
Q  628 acacgatatgagtatatgtccagttttttcctttgtcattaaaaaag---tgtaacaaactagatcaaatatatgtcactataaatataatcaataagaa 724  Q
    |||| ||| ||||||||||||| ||||||||||| || ||||||||    ||||||||||||  |||| |||||| ||||| ||||||||| ||||||||    
T  48103176 acacaataggagtatatgtccaattttttcctttatccttaaaaaaaagttgtaacaaacta--tcaagtatatgccactagaaatataattaataagaa 48103273  T
Q  725 aaggat 730  Q
    ||||||    
T  48103274 aaggat 48103279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 433 - 514
Target Start/End: Original strand, 662792 - 662873
Alignment:
Q  433 tatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    ||||||| |||||||||||||| | |||||||  |||||| ||||| ||||||||||| | ||||||| | |||||||||||    
T  662792 tatactaaatataaagaaaatagcatcttttgcctcttttgagttgactttttctctttctaaaattatcttcaactttcaa 662873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 433 - 514
Target Start/End: Original strand, 15970796 - 15970877
Alignment:
Q  433 tatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    ||||||||||| |||||||||||| | |||||  |||||| | |||||||||||| ||  |||||||||| |||||||||||    
T  15970796 tatactatatacaaagaaaataacatgttttgcctcttttgacttggctttttcttttttcaaaattaccctcaactttcaa 15970877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 825 - 878
Target Start/End: Complemental strand, 39465235 - 39465182
Alignment:
Q  825 catatgtgagataaaataactattcttggatcattgattatggaatcaagttgc 878  Q
    ||||||||||||||||||  |||| ||||||||||||||||||| |||||||||    
T  39465235 catatgtgagataaaatatttatttttggatcattgattatggagtcaagttgc 39465182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 643 - 686
Target Start/End: Complemental strand, 23162316 - 23162273
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaacta 686  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  23162316 atgtccagttttttcctttatcatttaaaaagtgtaacaaacta 23162273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 514
Target Start/End: Original strand, 39786286 - 39786367
Alignment:
Q  433 tatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    |||||||||||||||||||||| | | || ||| ||||||  | || ||||||||||| |||||| |||| |||||||||||    
T  39786286 tatactatatataaagaaaatagcatgttctgactcttttgggctgactttttctctttccaaaactaccctcaactttcaa 39786367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 1811740 - 1811807
Alignment:
Q  148 actatcatggcaagaaatattgaaagcaataaaatcggaacataaataaactttagggtttcaaccat 215  Q
    ||||||||| |||||||||| ||||  |||| ||||  ||||||||||||||| || |||||||||||    
T  1811740 actatcatgacaagaaatatggaaacaaatagaatcataacataaataaacttcagagtttcaaccat 1811807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 689
Target Start/End: Original strand, 5800672 - 5800711
Alignment:
Q  650 gttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  5800672 gttttttcctttatcatttaaaaagtgtaacaaactagat 5800711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Original strand, 9412582 - 9412620
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  9412582 ttttttcctttatcatttaaaaagtgtaacaaactagat 9412620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 689
Target Start/End: Complemental strand, 10199424 - 10199378
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||| |||||| |||| ||||| |||||||||||||||||||||    
T  10199424 atgtccaattttttactttatcatttaaaaagtgtaacaaactagat 10199378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 819 - 877
Target Start/End: Complemental strand, 24034222 - 24034164
Alignment:
Q  819 tcttaacatatgtgagataaaataactattcttggatcattgattatggaatcaagttg 877  Q
    ||||||||||||||||||||||||  |||| ||| |||||||||  ||||| |||||||    
T  24034222 tcttaacatatgtgagataaaatatttattgttgcatcattgatcctggaaccaagttg 24034164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 689
Target Start/End: Complemental strand, 38175255 - 38175209
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||||||||| |||||| ||||| ||||||||||||||| |||||    
T  38175255 atgtccagttttctcctttatcatttaaaaagtgtaacaaattagat 38175209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 648 - 686
Target Start/End: Original strand, 48525824 - 48525862
Alignment:
Q  648 cagttttttcctttgtcattaaaaaagtgtaacaaacta 686  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  48525824 cagttttttcctttatcatttaaaaagtgtaacaaacta 48525862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 712
Target Start/End: Original strand, 7809799 - 7809904
Alignment:
Q  607 acaaaatatatcatgtaacatacacgatatgagtatatgtcc--agttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatatgtcact 704  Q
    |||||||||||  ||||||| |||  ||||||||||||||||    ||||||| ||| || |||||||| ||||||||| || ||||| ||||||  |||    
T  7809799 acaaaatatatggtgtaacaaacataatatgagtatatgtccttttttttttcttttatccttaaaaaaatgtaacaaattatatcaagtatatg--act 7809896  T
Q  705 ataaatat 712  Q
    ||||||||    
T  7809897 ataaatat 7809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 430 - 463
Target Start/End: Complemental strand, 14553820 - 14553787
Alignment:
Q  430 atttatactatatataaagaaaataacctctttt 463  Q
    ||||||||||||||||||||||||||| ||||||    
T  14553820 atttatactatatataaagaaaataacatctttt 14553787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 430 - 463
Target Start/End: Complemental strand, 15994928 - 15994895
Alignment:
Q  430 atttatactatatataaagaaaataacctctttt 463  Q
    ||||||||||||||||||||||||||| ||||||    
T  15994928 atttatactatatataaagaaaataacatctttt 15994895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 689
Target Start/End: Complemental strand, 16683403 - 16683362
Alignment:
Q  648 cagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||||||| ||| ||||| |||||||||||||||||||||    
T  16683403 cagttttttcttttatcatttaaaaagtgtaacaaactagat 16683362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 689
Target Start/End: Complemental strand, 17657639 - 17657598
Alignment:
Q  648 cagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||||||| ||| ||||| |||||||||||||||||||||    
T  17657639 cagttttttcttttatcatttaaaaagtgtaacaaactagat 17657598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 514
Target Start/End: Complemental strand, 19008740 - 19008659
Alignment:
Q  433 tatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    |||||||||||||||||||||||| | |||||  | ||||  | || |||||| ||||  |||||||||||| |||||||||    
T  19008740 tatactatatataaagaaaataacatgttttggtttttttgggctgactttttatcttttcaaaattaccataaactttcaa 19008659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 19307516 - 19307474
Alignment:
Q  250 tatatgatttgatctctttatatagtgtataaattttatggtctc 294  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||    
T  19307516 tatatgatttgatctctt--tatagtgtataaattttatgctctc 19307474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 600 - 875
Target Start/End: Original strand, 43101507 - 43101794
Alignment:
Q  600 ttaccatacaaaatatatcatgtaacatacacgatatgagtatatgtccagttttttcctttgt-cattaaaaaa--gtgtaacaaactagatcaaatat 696  Q
    |||||| | |||||||| | ||||||| | ||||||||||||| |||||| |||||| |||| | | ||||||||  |||||||||||||||||||||||    
T  43101507 ttaccacataaaatataccgtgtaacaaatacgatatgagtatgtgtccaatttttttcttttttctttaaaaaatagtgtaacaaactagatcaaatat 43101606  T
Q  697 atgtcactataaatataatcaataagaaaaggataattatcatcgat---atgagtta-aatattttcaaaggaacaattagagag-----tagtgacaa 787  Q
    |||||| |||||||||||| |||||||||| ||||||||||| ||||   ||||| || ||||||| |||||||||||||| ||||     || | ||      
T  43101607 atgtcaatataaatataattaataagaaaaagataattatcaacgattcaatgagatataatatttacaaaggaacaattacagagtaaaataataactt 43101706  T
Q  788 ttatcatattcatcctctcaaagttaagtcctcttaacatatgtgagataaaataactattcttggatcattgattatggaatcaagt 875  Q
    |||||||||||||| |||||||  ||||| ||||||||||||| |||||||||||  ||||||||||| |||| ||||| ||||||||    
T  43101707 ttatcatattcatcatctcaaatgtaagtactcttaacatatgcgagataaaatatttattcttggataattggttatgaaatcaagt 43101794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 607 - 744
Target Start/End: Complemental strand, 35583267 - 35583127
Alignment:
Q  607 acaaaatatatcatgtaacatacacgatatgagtatatgtccagttttttc----ctttgtcattaaaaaagtgtaacaaactagatcaaatatatgtca 702  Q
    |||||||||||| ||||||| |||||||||||||  ||||||| ||||||     |||| || |||||||||||||| |||||||||||| ||| |||||    
T  35583267 acaaaatatatcgtgtaacaaacacgatatgagtgcatgtccaattttttttttactttatccttaaaaaagtgtaa-aaactagatcaagtatgtgtca 35583169  T
Q  703 ctataaatataatcaataagaaaaggataattatcatcgata 744  Q
      ||||||||||||||||| | ||||| ||||||||||||||    
T  35583168 taataaatataatcaataaaataaggaaaattatcatcgata 35583127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 616 - 724
Target Start/End: Complemental strand, 30841180 - 30841067
Alignment:
Q  616 atcatgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaaaaaa-gtgtaacaaactagatcaaatata-----tgtcactataaa 709  Q
    |||||| |||| |||||||| ||||| || |||||||||||| ||| || |||||||| ||||||||||||||||||| ||||     ||||| ||||||    
T  30841180 atcatgcaacaaacacgatacgagtaaatatccagttttttc-tttatccttaaaaaaagtgtaacaaactagatcaagtatattttttgtcaatataaa 30841082  T
Q  710 tataatcaataagaa 724  Q
    ||| |||||||||||    
T  30841081 tatcatcaataagaa 30841067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 698
Target Start/End: Original strand, 25536627 - 25536710
Alignment:
Q  610 aaatatatcatgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatat 698  Q
    ||||||||| ||||||| |||| |||||||||||||||||||||||| |     |   ||||||||||||||||||||||||| |||||    
T  25536627 aaatatatcgtgtaacaaacactatatgagtatatgtccagtttttttc-----ctaaaaaaaagtgtaacaaactagatcaagtatat 25536710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 643 - 686
Target Start/End: Original strand, 42207746 - 42207789
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaacta 686  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  42207746 atgtccagttttttcctttatcatttaaaaagtgtaacaaacta 42207789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 689
Target Start/End: Complemental strand, 8943477 - 8943415
Alignment:
Q  628 acacgatatgagtatatgtccag-ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| |||||||| |  ||||||||||| ||||| |||||||||||||||||||||    
T  8943477 acacgatatgaatatatgtctaacttttttcctttatcatttaaaaagtgtaacaaactagat 8943415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 720
Target Start/End: Complemental strand, 26620897 - 26620828
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatatgtcactataaatataatcaata 720  Q
    ||||| ||||| || |||||||| | ||||||||| |||||| |||| | ||||||||||||||||||||    
T  26620897 tttttgcctttatccttaaaaaaatataacaaactggatcaagtatacgccactataaatataatcaata 26620828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 689
Target Start/End: Original strand, 8990241 - 8990281
Alignment:
Q  649 agttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  8990241 agttttttcctttatcatttaaaaagtgtaacaaactagat 8990281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 689
Target Start/End: Complemental strand, 35627402 - 35627362
Alignment:
Q  649 agttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  35627402 agttttttcctttatcatttaaaaagtgtaacaaactagat 35627362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 651 - 698
Target Start/End: Original strand, 40493789 - 40493835
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatat 698  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  40493789 ttttttcctttatcatttaaaaagtgtaacaaactagat-aaatatat 40493835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 5776661 - 5776623
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  5776661 ttttttcctttatcatttaaaaagtgtaacaaactagat 5776623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 19288950 - 19288912
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  19288950 ttttttcctttatcatttaaaaagtgtaacaaactagat 19288912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 38455624 - 38455586
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  38455624 ttttttcctttatcatttaaaaagtgtaacaaactagat 38455586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 462
Target Start/End: Original strand, 18524624 - 18524653
Alignment:
Q  433 tatactatatataaagaaaataacctcttt 462  Q
    ||||||||||||||||||||||||||||||    
T  18524624 tatactatatataaagaaaataacctcttt 18524653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 514
Target Start/End: Complemental strand, 38099139 - 38099058
Alignment:
Q  433 tatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    ||||||||||||| ||||||||  ||||||||| ||||||   ||| ||||||||| |  || ||||||| |||||||||||    
T  38099139 tatactatatatatagaaaatagtctcttttgattcttttggattgactttttctcctttcagaattaccctcaactttcaa 38099058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 1e-46; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 599 - 744
Target Start/End: Original strand, 16822407 - 16822551
Alignment:
Q  599 attaccatacaaaatatatcatgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaa-aaaagtgtaacaaactagatcaaatata 697  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||  || |||||||||| || |||| ||||||||||||||||||||||||||||    
T  16822407 attaccatacaaaatatatcatgtaacaaacacgatatgagtatatgt--agatttttcctttatccttaataaaagtgtaacaaactagatcaaatata 16822504  T
Q  698 tgtcactataaatataatcaataagaaaaggataattatcatcgata 744  Q
    |||   |||||||||||||||||||||||||| ||||||||||||||    
T  16822505 tgttcttataaatataatcaataagaaaaggaaaattatcatcgata 16822551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 609 - 876
Target Start/End: Complemental strand, 32345195 - 32344907
Alignment:
Q  609 aaaatatatcatgtaacatacacgatatgagtatatgtccagtttttt-----cctttgtcattaaaaaa-gtgtaacaaactagatcaaatatatgt-- 700  Q
    |||||||||| ||||||| | | |||||||||||||||||| ||||||     | ||| || |||||||| |||||||||||||||||||||||||||      
T  32345195 aaaatatatcgtgtaacaaataagatatgagtatatgtccaattttttttttccatttatctttaaaaaaagtgtaacaaactagatcaaatatatgtat 32345096  T
Q  701 ----cactataaatataatcaataagaaaaggataattatcatcgata---tgagttaaa-tattttcaaaggaacaattagagagta-----gtgacaa 787  Q
        ||||||||| |||||||||||||||| || |||||||||| |||   | || |||| |||||| |||||| ||| || ||||||     |||||      
T  32345095 atgtcactataaacataatcaataagaaaaagaaaattatcatccatacattaagataaaatatttttaaaggagcaaatatagagtaaaatagtgactc 32344996  T
Q  788 ttatcatattcatcctctcaaagttaagtcctcttaacatatgtgagataaaataactattcttggatcattgattatggaatcaagtt 876  Q
    ||||||||| |||  |||||||| |||||||| ||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  32344995 ttatcatatccataatctcaaaggtaagtcctattaacatatgtgacataaaatatttattcttggatcattgattatggaatcaagtt 32344907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 609 - 876
Target Start/End: Complemental strand, 32361803 - 32361515
Alignment:
Q  609 aaaatatatcatgtaacatacacgatatgagtatatgtccagtttttt-----cctttgtcattaaaaaa-gtgtaacaaactagatcaaatatatgt-- 700  Q
    |||||||||| ||||||| | | |||||||||||||||||| ||||||     | ||| || |||||||| |||||||||||||||||||||||||||      
T  32361803 aaaatatatcgtgtaacaaataagatatgagtatatgtccaattttttttttccatttatctttaaaaaaagtgtaacaaactagatcaaatatatgtat 32361704  T
Q  701 ----cactataaatataatcaataagaaaaggataattatcatcgata---tgagttaaa-tattttcaaaggaacaattagagagta-----gtgacaa 787  Q
        ||||||||| |||||||||||||||| || |||||||||| |||   | || |||| |||||| |||||| ||| || ||||||     |||||      
T  32361703 atgtcactataaacataatcaataagaaaaagaaaattatcatccatacattaagataaaatatttttaaaggagcaaatatagagtaaaatagtgactc 32361604  T
Q  788 ttatcatattcatcctctcaaagttaagtcctcttaacatatgtgagataaaataactattcttggatcattgattatggaatcaagtt 876  Q
    ||||||||| |||  |||||||| |||||||| ||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  32361603 ttatcatatccataatctcaaaggtaagtcctattaacatatgtgacataaaatatttattcttggatcattgattatggaatcaagtt 32361515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 609 - 726
Target Start/End: Original strand, 9187569 - 9187685
Alignment:
Q  609 aaaatatatcatgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatatgtcactataa 708  Q
    |||||||||  ||||||| |||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||||| || ||||||||||||    
T  9187569 aaaatatattgtgtaacaaacacgatatgagtatatgtccagttttt-cctttatccttaaaaaggtgtaacaaactagatcaagtacatgtcactataa 9187667  T
Q  709 atataatcaataagaaaa 726  Q
    ||||||||||||||||||    
T  9187668 atataatcaataagaaaa 9187685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 620 - 698
Target Start/End: Complemental strand, 2079496 - 2079415
Alignment:
Q  620 tgtaacatacacgatatgagtatat----gtccagttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatat 698  Q
    ||||||| |||||||||||||||||    ||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||    
T  2079496 tgtaacaaacacgatatgagtatatatatgtccagttttttcttttatcatttaaaaagtgtaacaaactagat-aaatatat 2079415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 819 - 878
Target Start/End: Original strand, 9187773 - 9187832
Alignment:
Q  819 tcttaacatatgtgagataaaataactattcttggatcattgattatggaatcaagttgc 878  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||| || |||||||||    
T  9187773 tcttaacatatgtgagataaaatatttattcttgaatcattgattatagattcaagttgc 9187832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 668 - 721
Target Start/End: Original strand, 37370114 - 37370167
Alignment:
Q  668 aaaaaagtgtaacaaactagatcaaatatatgtcactataaatataatcaataa 721  Q
    |||||| |||||||||||||||||| |||||||| |||||||||||||| ||||    
T  37370114 aaaaaaatgtaacaaactagatcaactatatgtcgctataaatataatcgataa 37370167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 686
Target Start/End: Complemental strand, 15919727 - 15919658
Alignment:
Q  619 atgtaacatacacgatatgagtatat--gtccagttttttcctttgtcattaaaaaagtgtaacaaacta 686  Q
    |||||||| ||||||||||| |||||  ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  15919727 atgtaacaaacacgatatgaatatatatgtctagttttttcttttatcatttaaaaagtgtaacaaacta 15919658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 689
Target Start/End: Original strand, 24852369 - 24852439
Alignment:
Q  619 atgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||  |||||||||| ||||||||   |||||| |||| ||||| |||||||||||||||||||||    
T  24852369 atgtaacaaccacgatatgaatatatgtcttttttttttctttatcatttaaaaagtgtaacaaactagat 24852439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 640 - 688
Target Start/End: Complemental strand, 1526280 - 1526232
Alignment:
Q  640 tatatgtccagttttttcctttgtcattaaaaaagtgtaacaaactaga 688  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||||    
T  1526280 tatatgaccagttttttcctttatcatttagaaagtgtaacaaactaga 1526232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 430 - 462
Target Start/End: Complemental strand, 15919896 - 15919864
Alignment:
Q  430 atttatactatatataaagaaaataacctcttt 462  Q
    |||||||||||||||||||||||||||||||||    
T  15919896 atttatactatatataaagaaaataacctcttt 15919864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 646 - 685
Target Start/End: Complemental strand, 29037645 - 29037606
Alignment:
Q  646 tccagttttttcctttgtcattaaaaaagtgtaacaaact 685  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  29037645 tccagttttttcctttatcatttaaaaagtgtaacaaact 29037606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 1759701 - 1759663
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  1759701 ttttttcctttatcatttaaaaagtgtaacaaactagat 1759663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 689
Target Start/End: Original strand, 7019871 - 7019917
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||| ||| ||||| |||||||||||||||||||||    
T  7019871 atgtccagtttgttcttttatcatttaaaaagtgtaacaaactagat 7019917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Original strand, 24688553 - 24688591
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  24688553 ttttttcctttatcatttaaaaagtgtaacaaactagat 24688591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 36343086 - 36343048
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  36343086 ttttttcctttatcatttaaaaagtgtaacaaactagat 36343048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Original strand, 43921884 - 43921922
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  43921884 ttttttcctttatcatttaaaaagtgtaacaaactagat 43921922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 689
Target Start/End: Complemental strand, 8514286 - 8514249
Alignment:
Q  652 tttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  8514286 tttttcctttatcatttaaaaagtgtaacaaactagat 8514249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 689
Target Start/End: Complemental strand, 8515977 - 8515940
Alignment:
Q  652 tttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  8515977 tttttcctttatcatttaaaaagtgtaacaaactagat 8515940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 689
Target Start/End: Complemental strand, 8518056 - 8518019
Alignment:
Q  652 tttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  8518056 tttttcctttatcatttaaaaagtgtaacaaactagat 8518019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 689
Target Start/End: Complemental strand, 8519760 - 8519723
Alignment:
Q  652 tttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  8519760 tttttcctttatcatttaaaaagtgtaacaaactagat 8519723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 514
Target Start/End: Original strand, 9187314 - 9187395
Alignment:
Q  433 tatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    ||||||||||||||||||||||  ||||||||  || |||  | || ||||||||| | ||||||| ||||||||| |||||    
T  9187314 tatactatatataaagaaaatagtctcttttggctcatttgtgctgactttttctcattccaaaatcaccatcaacattcaa 9187395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 689
Target Start/End: Complemental strand, 36342560 - 36342523
Alignment:
Q  652 tttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  36342560 tttttcctttatcatttaaaaagtgtaacaaactagat 36342523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 668 - 877
Target Start/End: Original strand, 24637910 - 24638128
Alignment:
Q  668 aaaaaagtgtaacaaactagatcaaatatatgtcactataaatataatcaataagaaaaggataattatcatcgata---tgagttaaa-tattttcaaa 763  Q
    |||||||||| ||||| ||||||||||||||| || ||||||||||||||| |||||||| | |||||| ||| |||   || | |||| ||||||||||    
T  24637910 aaaaaagtgtgacaaattagatcaaatatatgccattataaatataatcaacaagaaaagaaaaattataatcaatacactgggataaaatattttcaaa 24638009  T
Q  764 ggaacaattagagagta-----gtgacaattatcatattcatcctctcaaagttaagtcctcttaacatatgtgagataaaataactattcttggatcat 858  Q
     || |||||| |  |||     |||||  ||||||||| |||| |||||||| ||||||||||||||||||| |||||||||||  ||||||||||||||    
T  24638010 tgagcaattaaaatgtaaattagtgacttttatcatatccatcatctcaaaggtaagtcctcttaacatatgagagataaaatatttattcttggatcat 24638109  T
Q  859 tgattatggaatcaagttg 877  Q
    |||||||||||||||||||    
T  24638110 tgattatggaatcaagttg 24638128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 607 - 715
Target Start/End: Complemental strand, 42398510 - 42398400
Alignment:
Q  607 acaaaatatatcatgtaacatacacgatatgagtatatgtccag--ttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatatgtcact 704  Q
    |||||||||||| ||| ||| ||||||||||||||||||| |||  |||||| |||| || |||||||||||| ||||||||||||||||||||||||||    
T  42398510 acaaaatatatcgtgtgacaaacacgatatgagtatatgttcagattttttttctttatccttaaaaaagtgtgacaaactagatcaaatatatgtcact 42398411  T
Q  705 ataaatataat 715  Q
    |||||||||||    
T  42398410 ataaatataat 42398400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 599 - 726
Target Start/End: Original strand, 54983289 - 54983418
Alignment:
Q  599 attaccatacaaaatatatcatgtaacatacacgatatgagtatatgtccagtttttt--cctttgtcattaaaaaagtgtaacaaactagatcaaatat 696  Q
    |||||| ||||||||||||| ||||||| ||||||||| | |||||||| ||||||||  | ||  || | |||||||||||||||||| ||||||||||    
T  54983289 attaccttacaaaatatatcgtgtaacaaacacgatattaatatatgtcaagttttttttctttattcttaaaaaaagtgtaacaaacttgatcaaatat 54983388  T
Q  697 atgtcactataaatataatcaataagaaaa 726  Q
    ||||||||||||||||||||||| ||||||    
T  54983389 atgtcactataaatataatcaatgagaaaa 54983418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 169 - 377
Target Start/End: Original strand, 3545177 - 3545383
Alignment:
Q  169 gaaagcaataaaatcggaacataaataaactttagggtttcaaccatatcttttgctctataatttttatataacagatagtatatgatttgatctcttt 268  Q
    ||||| |||| |||| || |||||| ||| |||||  ||||||||||||||||  |||| |||||| ||||||||| | | ||||||||||||| | |||    
T  3545177 gaaagaaatagaatcagagcataaacaaattttagaatttcaaccatatctttccctctttaatttgtatataacaaacaatatatgatttgatatattt 3545276  T
Q  269 atatagtgtataaattttatggtctcgtaaaaatgatcaaatagtttaagttttttcattaacccatcataaaattaaaatatttatcaagtgtctctta 368  Q
    |||  |||||||||||| ||| | |  || |||| || |||| ||||||| ||||  | |||||||||||||||||| |||| | ||||||  |||||||    
T  3545277 ata--gtgtataaatttcatgatattatacaaataattaaattgtttaagcttttgtaataacccatcataaaattagaataatcatcaagcatctctta 3545374  T
Q  369 ggtatatca 377  Q
    |||||||||    
T  3545375 ggtatatca 3545383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 668 - 726
Target Start/End: Original strand, 19545664 - 19545722
Alignment:
Q  668 aaaaaagtgtaacaaactagatcaaatatatgtcactataaatataatcaataagaaaa 726  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  19545664 aaaaaaatgtaacaaactagatcaagtatatgtcactgtaaatataatcaataagaaaa 19545722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 651 - 736
Target Start/End: Complemental strand, 49320217 - 49320132
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatatgtcactataaatataatcaataagaaaaggataattat 736  Q
    ||||||||||| || |||||||| ||||||||| | |||||||||||||||  | ||||||||||||||||||||| ||| |||||    
T  49320217 ttttttcctttatccttaaaaaaatgtaacaaattggatcaaatatatgtccttgtaaatataatcaataagaaaatgatcattat 49320132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 628 - 689
Target Start/End: Original strand, 10250640 - 10250703
Alignment:
Q  628 acacgatatgagtata--tgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||||||||  |||||||||||||||||| ||||| ||||| |||||||||| ||||    
T  10250640 acacgatatgagtatatatgtccagttttttcctttatcatttaaaaaatgtaacaaacaagat 10250703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 640 - 698
Target Start/End: Complemental strand, 2478596 - 2478539
Alignment:
Q  640 tatatgtccagttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatat 698  Q
    |||||||| ||||||||||||| ||||| |||||| |||||||||||||| ||||||||    
T  2478596 tatatgtcaagttttttcctttatcatttaaaaagcgtaacaaactagat-aaatatat 2478539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 643 - 689
Target Start/End: Complemental strand, 46620788 - 46620742
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||    
T  46620788 atgttcagttttttcctttatcatttaaaaagtgtaacaaactagat 46620742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 506
Target Start/End: Original strand, 4609124 - 4609197
Alignment:
Q  433 tatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatca 506  Q
    |||||||||||||||||||||||| |||||||| |||||| |  || ||||||||| | | ||||| |||||||    
T  4609124 tatactatatataaagaaaataacatcttttgattcttttgaactgtctttttctccttcgaaaatcaccatca 4609197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 480 - 514
Target Start/End: Original strand, 10250347 - 10250381
Alignment:
Q  480 ctttttctcttgccaaaattaccatcaactttcaa 514  Q
    ||||||||||| |||||||||||||||||||||||    
T  10250347 ctttttctctttccaaaattaccatcaactttcaa 10250381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Original strand, 20702281 - 20702319
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  20702281 ttttttcctttatcatttaaaaagtgtaacaaactagat 20702319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Original strand, 21796226 - 21796264
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  21796226 ttttttcctttatcatttaaaaagtgtaacaaactagat 21796264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Original strand, 33144971 - 33145009
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  33144971 ttttttcctttatcatttaaaaagtgtaacaaactagat 33145009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 689
Target Start/End: Original strand, 37830851 - 37830897
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||||||||||| ||||| ||||| || ||||||||||||    
T  37830851 atgtccagttttttcctttatcatttaaaaaatgcaacaaactagat 37830897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 38365001 - 38364963
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  38365001 ttttttcctttatcatttaaaaagtgtaacaaactagat 38364963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 514
Target Start/End: Complemental strand, 2012034 - 2011953
Alignment:
Q  433 tatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    ||||||||||| |||||||||||| | |||||  ||||||   ||| |||||||||||   ||||||||| |||||||||||    
T  2012034 tatactatatacaaagaaaataacatgttttgcctcttttggattgactttttctctttttaaaattaccctcaactttcaa 2011953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 462
Target Start/End: Original strand, 29656369 - 29656398
Alignment:
Q  433 tatactatatataaagaaaataacctcttt 462  Q
    ||||||||||||||||||||||||||||||    
T  29656369 tatactatatataaagaaaataacctcttt 29656398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 68; Significance: 7e-30; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 610 - 744
Target Start/End: Original strand, 101546 - 101680
Alignment:
Q  610 aaatatatcatgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaaaa-aagtgtaacaaactagatcaaatatatgtcactataa 708  Q
    ||||||||| ||||||| ||||  ||||||||||||||||||||||| |||| || |||||| |||||||| |||||||||||| |||||||||||||||    
T  101546 aaatatatcgtgtaacaaacactttatgagtatatgtccagttttttgctttatctttaaaaaaagtgtaaaaaactagatcaattatatgtcactataa 101645  T
Q  709 atataatcaataagaaaaggataattatcatcgata 744  Q
    ||||||| ||||| || | || ||||||||||||||    
T  101646 atataattaataaaaacaaga-aattatcatcgata 101680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 7e-30; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 633 - 744
Target Start/End: Complemental strand, 31555585 - 31555471
Alignment:
Q  633 atatgagtatatgtccagtttttt-cctttgtcattaa--aaaagtgtaacaaactagatcaaatatatgtcactataaatataatcaataagaaaagga 729  Q
    ||||||||||||||| |||||||| ||||  || ||||  ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  31555585 atatgagtatatgtcaagtttttttccttcatctttaacaaaaagtgtaacaaactatatcaaatatatgtcactataaatataaacaataagaaaagga 31555486  T
Q  730 taattatcatcgata 744  Q
     ||||||||||||||    
T  31555485 aaattatcatcgata 31555471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 607 - 726
Target Start/End: Original strand, 17827517 - 17827638
Alignment:
Q  607 acaaaatatatcatgtaacatacacgatatgagtatatgtccagttttttc--ctttgtcatta-aaaaagtgtaacaaactagatcaaatatatgtcac 703  Q
    |||||||||||||||||| | ||| |||||||||||||||||| ||||||   |||| || ||  ||||| | |||||||||||||||||||||||| ||    
T  17827517 acaaaatatatcatgtaagaaaca-gatatgagtatatgtccaatttttttttctttatcctttgaaaaaatataacaaactagatcaaatatatgttac 17827615  T
Q  704 tataaatataatcaataagaaaa 726  Q
    |||||||||||||||||||||||    
T  17827616 tataaatataatcaataagaaaa 17827638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 628 - 721
Target Start/End: Original strand, 17822533 - 17822632
Alignment:
Q  628 acacgatatgagtatatgtccagttttttc----ctttgtcatt--aaaaaagtgtaacaaactagatcaaatatatgtcactataaatataatcaataa 721  Q
    |||||||||||||||||||||||||||||     |||| || ||  |||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  17822533 acacgatatgagtatatgtccagtttttttttttctttatcctttaaaaaaaatataacaaactagatcaaatatatgtcactataaatataatcaataa 17822632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 604 - 726
Target Start/End: Original strand, 17873157 - 17873283
Alignment:
Q  604 catacaaaatatatcatgtaacatacacgatatgagtata-tgtccagtttt--ttcctttgtcattaaaaaag-tgtaacaaactagatcaaatatatg 699  Q
    |||||||||||||||| |||||| |||||||| ||||||| || |  |||||  ||||||| || ||||||||  | |||||||||||||||||||||||    
T  17873157 catacaaaatatatcacgtaacaaacacgatacgagtataatgacatgttttatttcctttttccttaaaaaaaatataacaaactagatcaaatatatg 17873256  T
Q  700 tcactataaatataatcaataagaaaa 726  Q
     || |||||||||||||||||||||||    
T  17873257 gcattataaatataatcaataagaaaa 17873283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 818 - 878
Target Start/End: Complemental strand, 31555421 - 31555361
Alignment:
Q  818 ctcttaacatatgtgagataaaataactattcttggatcattgattatggaatcaagttgc 878  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  31555421 ctcttatcatatgtgagataaaatatttattcttggatcattgattatgaaatcaagttgc 31555361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 428 - 521
Target Start/End: Complemental strand, 25915518 - 25915424
Alignment:
Q  428 taatttatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttc-aaacaaata 521  Q
    |||| |||||||||||||||||||||||||||||||   ||||||   |||| |||||||||| ||||||| ||| ||||||||| |||||||||    
T  25915518 taatctatactatatataaagaaaataacctcttttagctcttttggtttggttttttctcttcccaaaatcaccctcaactttcgaaacaaata 25915424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 689
Target Start/End: Original strand, 20973888 - 20973933
Alignment:
Q  644 tgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||    
T  20973888 tgtccagttttttcccttatcatttaaaaagtgtaacaaactagat 20973933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 689
Target Start/End: Complemental strand, 963417 - 963372
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||||||||||| |||||  ||||||||||||||||||||    
T  963417 atgtccagttttttcctttatcatt-taaaagtgtaacaaactagat 963372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 12413243 - 12413205
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  12413243 ttttttcctttatcatttaaaaagtgtaacaaactagat 12413205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 12425303 - 12425265
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  12425303 ttttttcctttatcatttaaaaagtgtaacaaactagat 12425265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 689
Target Start/End: Original strand, 19063780 - 19063826
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||| |||||| |||| ||||| |||||||||||||||||||||    
T  19063780 atgtccactttttttctttatcatttaaaaagtgtaacaaactagat 19063826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 514
Target Start/End: Original strand, 16039096 - 16039177
Alignment:
Q  433 tatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    ||||||||||||| |||||||||| | |||||| ||||||  | || ||||||  ||| | ||||||||| |||||||||||    
T  16039096 tatactatatatagagaaaataacatgttttgattcttttgggctgacttttttcctttctaaaattaccctcaactttcaa 16039177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 644
Target Start/End: Original strand, 17874531 - 17874568
Alignment:
Q  607 acaaaatatatcatgtaacatacacgatatgagtatat 644  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  17874531 acaaaatatatcacgtaacaaacacgatatgagtatat 17874568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 462
Target Start/End: Complemental strand, 27360717 - 27360684
Alignment:
Q  429 aatttatactatatataaagaaaataacctcttt 462  Q
    ||||||||||||||||||||||||||| ||||||    
T  27360717 aatttatactatatataaagaaaataatctcttt 27360684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 689
Target Start/End: Complemental strand, 40301767 - 40301722
Alignment:
Q  644 tgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||| |||||| |||| ||||| |||||||||||||||||||||    
T  40301767 tgtccaatttttttctttatcatttaaaaagtgtaacaaactagat 40301722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 632 - 726
Target Start/End: Original strand, 21967721 - 21967817
Alignment:
Q  632 gatatgagtatatgtccagttttttcctttgtcattaaaaaa--gtgtaacaaactagatcaaatatatgtcactataaatataatcaataagaaaa 726  Q
    |||||||||||||||||||||||||| ||| || ||||||||  || |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21967721 gatatgagtatatgtccagttttttcttttatctttaaaaaaaagtctaacaaactagatcaagtatatgtcactataaatataatcaataagaaaa 21967817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 632 - 726
Target Start/End: Original strand, 21990157 - 21990253
Alignment:
Q  632 gatatgagtatatgtccagttttttcctttgtcattaaaaaa--gtgtaacaaactagatcaaatatatgtcactataaatataatcaataagaaaa 726  Q
    |||||||||||||||||||||||||| ||| || ||||||||  || |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21990157 gatatgagtatatgtccagttttttcttttatctttaaaaaaaagtctaacaaactagatcaagtatatgtcactataaatataatcaataagaaaa 21990253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 128 - 377
Target Start/End: Complemental strand, 5217114 - 5216869
Alignment:
Q  128 agggaaaggaagaaatagacactatcatggcaagaaatattgaaagcaataaaatcggaacataaataaactttagggtttcaaccatatcttttgctct 227  Q
    |||||||||||||| |||| ||||| ||||  |||||||| ||||| |||| |||   ||||| || ||  ||||| | |||||||||||||||  ||||    
T  5217114 agggaaaggaagaagtagatactattatggatagaaatatggaaagaaatagaattaaaacattaacaagttttagagcttcaaccatatctttccctct 5217015  T
Q  228 ataatttttatataacagatagtatatgatttgatctctttatatagtgtataaattttatggtctcgtaaaaatgatcaaatagtttaagttttttcat 327  Q
     |||||||||||||||| || |||||||||||| | | ||  |||||| ||||| ||| |||||||| | ||||| || ||| |||||||| ||||| |     
T  5217014 -taatttttatataacaaatggtatatgatttggtatatt--tatagtctataagtttcatggtctcat-aaaataattaaacagtttaaggttttttag 5216919  T
Q  328 taacccatcataaaattaaaatatttatcaagtgtctcttaggtatatca 377  Q
    ||| |||| | |||||   |||| | |||||  |||||||||||||||||    
T  5216918 taatccataaaaaaataggaataatcatcaaacgtctcttaggtatatca 5216869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 674 - 721
Target Start/End: Complemental strand, 13475368 - 13475321
Alignment:
Q  674 gtgtaacaaactagatcaaatatatgtcactataaatataatcaataa 721  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  13475368 gtgtaacaaactaggtcaaatatatgtcactataaatataatcaataa 13475321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 668 - 726
Target Start/End: Original strand, 297781 - 297838
Alignment:
Q  668 aaaaaagtgtaacaaactagatcaaatatatgtcactataaatataatcaataagaaaa 726  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  297781 aaaaaagtgtaacaat-tagatcaagtatatgtcactataaatataatcaataagaaaa 297838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 672 - 726
Target Start/End: Original strand, 21082794 - 21082848
Alignment:
Q  672 aagtgtaacaaactagatcaaatatatgtcactataaatataatcaataagaaaa 726  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  21082794 aagtgtaacaaactatatcaagtatatgtcactataaatataaccaataagaaaa 21082848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 514
Target Start/End: Complemental strand, 29626145 - 29626065
Alignment:
Q  434 atactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    ||||||||||||||||||||||| |  ||||| ||||||  | || ||||||||||| ||||||||| | |||||||||||    
T  29626145 atactatatataaagaaaataacatgctttgactcttttgggctgactttttctctttccaaaattatcttcaactttcaa 29626065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 435 - 514
Target Start/End: Complemental strand, 17439064 - 17438985
Alignment:
Q  435 tactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    |||||||||||||||||||||||||||||   ||||||  | |||||||  ||||| ||||||||||| |||| ||||||    
T  17439064 tactatatataaagaaaataacctcttttagctcttttgggctggctttacctctttccaaaattaccctcaattttcaa 17438985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 718
Target Start/End: Complemental strand, 14770850 - 14770732
Alignment:
Q  602 accatacaaaatatatcatgtaacatacacgatatgagtatatgtc-cagttttttcctttgtcatt-aaaaaagtgtaacaaactagatcaaatatatg 699  Q
    |||| ||||||||||||| |||||| ||||||| |||||||||| |  | ||||||| ||| || || ||||||||  |||||||| |||||| ||||||    
T  14770850 accacacaaaatatatcaagtaacaaacacgatttgagtatatgacgaatttttttcatttatccttaaaaaaagtaaaacaaactcgatcaagtatatg 14770751  T
Q  700 tcactataaatataatcaa 718  Q
    |   |||||||||||||||    
T  14770750 ttgttataaatataatcaa 14770732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 650 - 686
Target Start/End: Complemental strand, 38277907 - 38277871
Alignment:
Q  650 gttttttcctttgtcattaaaaaagtgtaacaaacta 686  Q
    |||||||||||||||||||||||||| ||||||||||    
T  38277907 gttttttcctttgtcattaaaaaagtataacaaacta 38277871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 689
Target Start/End: Original strand, 41923253 - 41923293
Alignment:
Q  649 agttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  41923253 agttttttcctttatcatttaaaaagtgtaacaaactagat 41923293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 462
Target Start/End: Original strand, 18956709 - 18956740
Alignment:
Q  431 tttatactatatataaagaaaataacctcttt 462  Q
    ||||||||||||||||||||||||||||||||    
T  18956709 tttatactatatataaagaaaataacctcttt 18956740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 1149507 - 1149469
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  1149507 tttttttctttatcattaaaaaagtgtaacaaactagat 1149469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 5492669 - 5492631
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  5492669 ttttttcctttgtcatttaaaaagtataacaaactagat 5492631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 5812248 - 5812210
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  5812248 ttttttcctttatcatttaaaaagtgtaacaaactagat 5812210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 19592307 - 19592269
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  19592307 ttttttcctttatcatttaaaaagtgtaacaaactagat 19592269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 689
Target Start/End: Original strand, 21495474 - 21495520
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||| |||||| |||| ||||| |||||||||||||||||||||    
T  21495474 atgtccaattttttactttatcatttaaaaagtgtaacaaactagat 21495520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Original strand, 27947668 - 27947706
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  27947668 ttttttcctttatcatttaaaaagtgtaacaaactagat 27947706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Original strand, 35379790 - 35379828
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  35379790 ttttttcctttatcatttaaaaagtgtaacaaactagat 35379828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 49758548 - 49758510
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  49758548 ttttttcctttatcatttaaaaagtgtaacaaactagat 49758510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 50483751 - 50483713
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  50483751 ttttttcctttatcatttaaaaagtgtaacaaactagat 50483713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 656
Target Start/End: Complemental strand, 13475440 - 13475391
Alignment:
Q  607 acaaaatatatcatgtaacatacacgatatgagtatatgtccagtttttt 656  Q
    ||||| |||||| ||||||| ||||| ||||| |||||||||||||||||    
T  13475440 acaaattatatcgtgtaacaaacacggtatgaatatatgtccagtttttt 13475391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 600 - 726
Target Start/End: Original strand, 48420486 - 48420616
Alignment:
Q  600 ttaccatacaaaatatatcatgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaaaaaa----gtgtaacaaactagatcaaata 695  Q
    |||||| |||||||||||| ||||||| ||||||||||||||||| | || ||||||||||| || ||||||||    ||||||||||||||||||| ||    
T  48420486 ttaccagacaaaatatatcgtgtaacaaacacgatatgagtatatcttcaattttttcctttatccttaaaaaaaaatgtgtaacaaactagatcaagta 48420585  T
Q  696 tatgtcactataaatataatcaataagaaaa 726  Q
    ||| | | | |||||||||||||||||||||    
T  48420586 tatattattgtaaatataatcaataagaaaa 48420616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 600 - 842
Target Start/End: Complemental strand, 27579354 - 27579102
Alignment:
Q  600 ttaccatacaaaatatatcatgtaacatacacgatatgagtatatgtccagttttttc-ctttgtcattaaaaaag--tgtaacaaactagatcaaatat 696  Q
    |||||| |||||||||||| || |||| |||  |||||||||||||| || ||||||  |||| || ||||||||   ||||| ||| || ||||| |||    
T  27579354 ttaccacacaaaatatatcgtgcaacaaacataatatgagtatatgttcaattttttttctttatccttaaaaaaaattgtaataaattaaatcaagtat 27579255  T
Q  697 atgtcactataaatataatcaataagaaaaggataattatcatcgata---tgag-ttaaatattttcaaaggaacaattagag---agtagtgacaatt 789  Q
    ||||| ||||||||||||||||| |||||| || ||||||||| ||||    ||| | ||||||||||||| || |||||||||   | |||||||  ||    
T  27579254 atgtctctataaatataatcaattagaaaaagaaaattatcattgatacaccgagataaaatattttcaaatgagcaattagagtaaaatagtgactctt 27579155  T
Q  790 atcatattcatcctctcaaagttaagtcctcttaacatatgtgagataaaata 842  Q
     ||  || ||||||||||||| ||| || ||||| ||||||||||||||||||    
T  27579154 ctctcatacatcctctcaaaggtaaatcatcttagcatatgtgagataaaata 27579102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 779 - 873
Target Start/End: Complemental strand, 25222087 - 25221995
Alignment:
Q  779 tagtgacaattatcatattcatcctctcaaagttaagtcctcttaacatatgtgagataaaataactattcttggatcattgattatggaatcaa 873  Q
    |||||||  |||||||||| |||||||||||| ||||||||||||  |||| ||||||||||||  |||||||| |||||||||| |||||||||    
T  25222087 tagtgacttttatcatatttatcctctcaaaggtaagtcctctta--atatatgagataaaatatttattcttgaatcattgattttggaatcaa 25221995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 433 - 523
Target Start/End: Complemental strand, 23773694 - 23773603
Alignment:
Q  433 tatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa-acaaataga 523  Q
    |||||||||||||||||||||||| | ||| || |||||| || || ||||||||||| ||||||||| | |||| |||||| |||||||||    
T  23773694 tatactatatataaagaaaataacatgtttcgattcttttgagctgtctttttctctttccaaaattatcctcaaatttcaatacaaataga 23773603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 600 - 718
Target Start/End: Original strand, 43879987 - 43880111
Alignment:
Q  600 ttaccatacaaaatatatcatgtaacatacacgatatga---gtatatgtccagtttttt--cctttgtcattaaaaa-agtgtaacaaactagatcaaa 693  Q
    |||||| |||||||||||| ||||||| ||||||||| |   ||||||||| | ||||||  | ||| |  ||||||| |||||||||||||| |||||     
T  43879987 ttaccacacaaaatatatcgtgtaacaaacacgatataataagtatatgtctaattttttttcatttattcttaaaaatagtgtaacaaactatatcaag 43880086  T
Q  694 tatatgtcactataaatataatcaa 718  Q
    ||||||||||||||||| |||||||    
T  43880087 tatatgtcactataaatttaatcaa 43880111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 672 - 726
Target Start/End: Complemental strand, 32591216 - 32591162
Alignment:
Q  672 aagtgtaacaaactagatcaaatatatgtcactataaatataatcaataagaaaa 726  Q
    |||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||    
T  32591216 aagtgtaacaaattaggtcaattatatgttactataaatataatcaataagaaaa 32591162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 753 - 842
Target Start/End: Original strand, 43880116 - 43880210
Alignment:
Q  753 atattttcaaaggaacaattagagagta-----gtgacaattatcatattcatcctctcaaagttaagtcctcttaacatatgtgagataaaata 842  Q
    |||||||||||||| |||||| ||||||     |||||  ||||||||| ||||||| ||||  ||||||||||||||||||||||||| |||||    
T  43880116 atattttcaaaggagcaattaaagagtaaattagtgactcttatcatatacatcctcacaaaaataagtcctcttaacatatgtgagatcaaata 43880210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 609 - 712
Target Start/End: Original strand, 15474997 - 15475103
Alignment:
Q  609 aaaatatatcatgtaacatacacgatatgagtatatgtccagttttttcct---ttgtcattaaaaaagtgtaacaaactagatcaaatatatgtcacta 705  Q
    |||||||||| ||||||| ||| |||||||| |||||||||||||||| ||   || | |  |||||| |||||||||| | ||||||||||||| | ||    
T  15474997 aaaatatatcgtgtaacaaacatgatatgagcatatgtccagttttttactatattcttaaaaaaaaaatgtaacaaaccatatcaaatatatgttatta 15475096  T
Q  706 taaatat 712  Q
    |||||||    
T  15475097 taaatat 15475103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 608 - 659
Target Start/End: Complemental strand, 25182635 - 25182584
Alignment:
Q  608 caaaatatatcatgtaacatacacgatatgagtatatgtccagttttttcct 659  Q
    ||||||||||| ||||| | ||| ||||||||||||||||||||||||||||    
T  25182635 caaaatatatcgtgtaataaacatgatatgagtatatgtccagttttttcct 25182584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 643 - 689
Target Start/End: Original strand, 15470361 - 15470407
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  15470361 atgtccaattttttcctttatcatttaaaaagtgtaacaaactagat 15470407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 522
Target Start/End: Complemental strand, 25182897 - 25182804
Alignment:
Q  430 atttatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa-acaaatag 522  Q
    |||||||||||||||||||||||| | ||||||||  |||||| || || ||||||||  | || | |||||| ||||||||||| ||||||||    
T  25182897 atttatactatatataaagaaaatgatctcttttgcctcttttgagctgtctttttcttcttcccatattaccctcaactttcaacacaaatag 25182804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 600 - 641
Target Start/End: Complemental strand, 44066531 - 44066490
Alignment:
Q  600 ttaccatacaaaatatatcatgtaacatacacgatatgagta 641  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  44066531 ttaccacacaaaatatatcatgtaacaaacacgatatgagta 44066490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 511
Target Start/End: Original strand, 17503938 - 17504022
Alignment:
Q  427 ttaatttatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaacttt 511  Q
    ||||| ||| ||||| |||||||||||||| |||||||| | ||||  |||| ||||||||  |  |||||||||||||||||||    
T  17503938 ttaatctatgctatacataaagaaaataacatcttttgacttttttgggttgactttttcttctttcaaaattaccatcaacttt 17504022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 689
Target Start/End: Complemental strand, 5880958 - 5880912
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||| ||||||||||| || || |||||||||||||||||||||    
T  5880958 atgtccaattttttcctttatcgtttaaaaagtgtaacaaactagat 5880912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Original strand, 11407203 - 11407241
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  11407203 ttttttcctttatcatttaaaaagtgtaacaaactagat 11407241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 12214952 - 12214914
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  12214952 ttttttcctttatcatttaaaaagtgtaacaaactagat 12214914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 16143599 - 16143561
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  16143599 ttttttcctttatcatttaaaaagtgtaacaaactagat 16143561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 27307811 - 27307773
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  27307811 ttttttcctttatcatttaaaaagtgtaacaaactagat 27307773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Original strand, 32306857 - 32306895
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  32306857 ttttttcctttatcatttaaaaagtgtaacaaactagat 32306895  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Original strand, 34748745 - 34748783
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  34748745 ttttttcctttatcatttaaaaagtgtaacaaactagat 34748783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 37298225 - 37298187
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  37298225 ttttttcctttatcatttaaaaagtgtaacaaactagat 37298187  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 43577635 - 43577597
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  43577635 ttttttcctttatcatttaaaaagtgtaacaaactagat 43577597  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 696 - 726
Target Start/End: Complemental strand, 44065332 - 44065302
Alignment:
Q  696 tatgtcactataaatataatcaataagaaaa 726  Q
    |||||||||||||||||||||||||||||||    
T  44065332 tatgtcactataaatataatcaataagaaaa 44065302  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 47402945 - 47402907
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  47402945 ttttttcctttatcatttaaaaagtgtaacaaactagat 47402907  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 707 - 744
Target Start/End: Complemental strand, 25182556 - 25182519
Alignment:
Q  707 aaatataatcaataagaaaaggataattatcatcgata 744  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  25182556 aaatataatcaataagaaaagcaaaattatcatcgata 25182519  T

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Target: chr6 (Bit Score: 59; Significance: 2e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 610 - 711
Target Start/End: Complemental strand, 14912115 - 14912013
Alignment:
Q  610 aaatatatcatgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaaaaa-agtgtaacaaactagatcaaatatatgtcactataa 708  Q
    ||||||||| ||||||| |||||||||||||||||||  | ||||||||||| || ||||||| | ||||| ||||||||||||||||||||||||||||    
T  14912115 aaatatatcgtgtaacaaacacgatatgagtatatgttaaattttttcctttatccttaaaaataatgtaataaactagatcaaatatatgtcactataa 14912016  T
Q  709 ata 711  Q
    |||    
T  14912015 ata 14912013  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 608 - 726
Target Start/End: Complemental strand, 19707452 - 19707331
Alignment:
Q  608 caaaatatatcatgtaacatacacgatatgagtatatgtccagtttttt--cctttgtcatt-aaaaaagtgtaacaaactagatcaaatatatgtcact 704  Q
    ||||||||||| | ||| | | |||||||||||||||||||| ||||||  ||||| || || ||||||||||||||||||||||||||||||| |||||    
T  19707452 caaaatatatcgtataaaaaatacgatatgagtatatgtccaattttttttcctttatctttgaaaaaagtgtaacaaactagatcaaatatatatcact 19707353  T
Q  705 ataaatataatcaataagaaaa 726  Q
     |||||||||||||||| ||||    
T  19707352 gtaaatataatcaataaaaaaa 19707331  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 600 - 726
Target Start/End: Complemental strand, 4965602 - 4965467
Alignment:
Q  600 ttaccatacaaaatatatcatgtaacatacacgatatgagtatatgtccagttttttcc---------tttgtcattaaaaaagtgtaacaaactagatc 690  Q
    |||||| ||||||||||||  |||||| ||||||||||||||||||| |||||||||           ||| |  |||||||||||||||| |||| |||    
T  4965602 ttaccacacaaaatatatcgggtaacaaacacgatatgagtatatgttcagttttttttattttattttttatgtttaaaaaagtgtaacagactaaatc 4965503  T
Q  691 aaatatatgtcactataaatataatcaataagaaaa 726  Q
    ||||||||||||||||||||||||||||||||||||    
T  4965502 aaatatatgtcactataaatataatcaataagaaaa 4965467  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 428 - 522
Target Start/End: Original strand, 23124173 - 23124268
Alignment:
Q  428 taatttatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa-acaaatag 522  Q
    ||||||||||||||||||||||||||||| | |||||  ||||||  | || ||||||||||| ||||||||||| | || |||||| ||||||||    
T  23124173 taatttatactatatataaagaaaataacatgttttggttcttttgggatgactttttctctttccaaaattacccttaattttcaatacaaatag 23124268  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 814 - 876
Target Start/End: Original strand, 4115756 - 4115818
Alignment:
Q  814 agtcctcttaacatatgtgagataaaataactattcttggatcattgattatggaatcaagtt 876  Q
    ||||||||| ||||||||| |||||||||  |||||||  |||||||||||||||||||||||    
T  4115756 agtcctcttcacatatgtgggataaaatatttattcttaaatcattgattatggaatcaagtt 4115818  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 427 - 514
Target Start/End: Complemental strand, 12170245 - 12170158
Alignment:
Q  427 ttaatttatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    |||||||||||||||||||||||||||| | | ||| || ||||||  | ||  |||||||||| ||||||||||| | |||||||||    
T  12170245 ttaatttatactatatataaagaaaatagcatatttagactcttttaggctgaatttttctctttccaaaattacccttaactttcaa 12170158  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 640 - 686
Target Start/End: Original strand, 28548613 - 28548659
Alignment:
Q  640 tatatgtccagttttttcctttgtcattaaaaaagtgtaacaaacta 686  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  28548613 tatatgtcgagttttttcctttatcatttaaaaagtgtaacaaacta 28548659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 643 - 689
Target Start/End: Original strand, 33573258 - 33573304
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  33573258 atgtccatttttttcctttatcatttaaaaagtgtaacaaactagat 33573304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 815 - 878
Target Start/End: Complemental strand, 14911967 - 14911904
Alignment:
Q  815 gtcctcttaacatatgtgagataaaataactattcttggatcattgattatggaatcaagttgc 878  Q
    ||||||||||||||||||||||||||||  ||||||| ||| |   |||||| |||||||||||    
T  14911967 gtcctcttaacatatgtgagataaaatatttattcttagataaaaaattatgaaatcaagttgc 14911904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 3103837 - 3103799
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  3103837 ttttttcctttatcatttaaaaagtgtaacaaactagat 3103799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 3834028 - 3833990
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  3834028 ttttttcctttatcatttaaaaagtgtaacaaactagat 3833990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 678 - 745
Target Start/End: Original strand, 4115623 - 4115692
Alignment:
Q  678 aacaaactagatcaaatatatgtcactataaatat--aatcaataagaaaaggataattatcatcgatat 745  Q
    ||||||||||||||  ||||||||| | |||||||  ||||||||||||||| | |||||| ||||||||    
T  4115623 aacaaactagatcatgtatatgtcattgtaaatatataatcaataagaaaagaaaaattattatcgatat 4115692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 619 - 686
Target Start/End: Original strand, 13846919 - 13846982
Alignment:
Q  619 atgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaaaaaagtgtaacaaacta 686  Q
    |||||||| ||||||||||    ||||||  |||||||||||| ||||| ||||||||||||||||||    
T  13846919 atgtaacaaacacgatatg----tatgtctggttttttcctttatcatttaaaaagtgtaacaaacta 13846982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 26253096 - 26253058
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  26253096 ttttttcctttatcatttaaaaagtgtaacaaactagat 26253058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Complemental strand, 28712131 - 28712093
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  28712131 ttttttcctttgtcatttgaaaagtgtaacaaactagat 28712093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 600 - 736
Target Start/End: Original strand, 6671 - 6808
Alignment:
Q  600 ttaccatacaaaatatatcatgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaaa-aaagtgtaacaaactagatcaaatatat 698  Q
    |||||| ||||||||||| ||  |||  ||||||||| |  ||||||| | ||||||| ||| || ||||| ||||||||||||| ||||||||||| ||    
T  6671 ttaccacacaaaatatattatccaactaacacgatataacaatatgtctaattttttcttttatccttaaacaaagtgtaacaaattagatcaaatacat 6770  T
Q  699 gtcactataaatataatcaataagaaaaggataattat 736  Q
    |||||| ||| |||||| ||||||||||||| ||||||    
T  6771 gtcactgtaagtataattaataagaaaaggaaaattat 6808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 788 - 878
Target Start/End: Original strand, 6845 - 6934
Alignment:
Q  788 ttatcatattcatcctctcaaagttaagtcctcttaacatatgtgagataaaataactattcttggatcattgattatggaatcaagttgc 878  Q
    ||||||||||||||||||||||| || | |||| |||||||||||||||||||||  |||| |||||||||||| |||  |||||||||||    
T  6845 ttatcatattcatcctctcaaaggtaggccctcgtaacatatgtgagataaaatatttatttttggatcattgactat-taatcaagttgc 6934  T

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Target: scaffold0707 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 643 - 689
Target Start/End: Complemental strand, 534 - 488
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  534 atgtccatttttttcctttatcatttaaaaagtgtaacaaactagat 488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 689
Target Start/End: Complemental strand, 47365 - 47316
Alignment:
Q  640 tatatgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    |||||||| | ||||||||||| ||||| |||||||||||||||||||||    
T  47365 tatatgtcaatttttttcctttatcatttaaaaagtgtaacaaactagat 47316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 514
Target Start/End: Original strand, 15592 - 15673
Alignment:
Q  433 tatactatatataaagaaaataacctcttttgaatcttttcagttggctttttctcttgccaaaattaccatcaactttcaa 514  Q
    |||||||||||||||||||||||| | |||||| ||||||   ||| ||||||||||| | ||| ||| | |||||||||||    
T  15592 tatactatatataaagaaaataacatgttttgactctttttgattgactttttctctttctaaagttatcctcaactttcaa 15673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1944 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1944
Description:

Target: scaffold1944; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 643 - 687
Target Start/End: Complemental strand, 375 - 331
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactag 687  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||    
T  375 atgtacagttttttcctttatcatttaaaaagtgtaacaaactag 331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1790 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1790
Description:

Target: scaffold1790; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 643 - 687
Target Start/End: Complemental strand, 516 - 472
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactag 687  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||    
T  516 atgtacagttttttcctttatcatttaaaaagtgtaacaaactag 472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 698
Target Start/End: Original strand, 73262 - 73344
Alignment:
Q  615 tatcatgtaacatacacgatatgagtatatgtccagttttttcctttgtcattaaaaaagtgtaacaaactagatcaaatatat 698  Q
    |||| ||||||| ||||||||  | |||||||| | ||||||| ||| |  ||||||||||||||||||||||||||| |||||    
T  73262 tatcgtgtaacaaacacgatacaaatatatgtctatttttttcgtttatt-ttaaaaaagtgtaacaaactagatcaagtatat 73344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 689
Target Start/End: Complemental strand, 9349 - 9303
Alignment:
Q  643 atgtccagttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||| |||||| |||| ||||| |||||||||||||||||||||    
T  9349 atgtccattttttttctttatcatttaaaaagtgtaacaaactagat 9303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 689
Target Start/End: Original strand, 26690 - 26728
Alignment:
Q  651 ttttttcctttgtcattaaaaaagtgtaacaaactagat 689  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  26690 ttttttcctttatcatttaaaaagtgtaacaaactagat 26728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 692
Target Start/End: Complemental strand, 2307 - 2222
Alignment:
Q  609 aaaatatatcatgtaacatacacgatatgagtatatgtcca-gttttttcctttgtcatt-aaaaaagtgtaacaaactagatcaa 692  Q
    |||||||||||| || || ||| ||||||||||||||||||  ||||||||||| |  || |||||||||||||||| || |||||    
T  2307 aaaatatatcatatagcaaacatgatatgagtatatgtccattttttttcctttatggttaaaaaaagtgtaacaaattaaatcaa 2222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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