View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13055_low_20 (Length: 326)
Name: NF13055_low_20
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 41620423 - 41620257
Alignment:
| Q |
1 |
attattctatttgttgaagataatgttgagcaaatgcaagttatatcaagtattattgttaattaatttcttttgtagagctcatgggaagaaagt---- |
96 |
Q |
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| T |
41620423 |
attattctatttgttgaagataatgttgagcaaatgcaagttatatcaagtattattgtttattaatttcttttgtagagctcatgggaagaaagttaat |
41620324 |
T |
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| Q |
97 |
----taatactaatatatctagagtatattattctatttgtttctcaaatgaagttagtacttataa |
159 |
Q |
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| T |
41620323 |
cacttaatactaatatatctagagtatattattctatttgtttctcaaataaagttagtacttataa |
41620257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 41619898 - 41619816
Alignment:
| Q |
151 |
tacttataattaaagataaatgtcaaccaagtggtattgttgatagtattaaaatggtgaaggtgcttttctttcatggtggtt |
234 |
Q |
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| T |
41619898 |
tacttataattaaagataaatgtcaacca-gtagtattgttgatagtattaaaatggtgaaggtgcttttctttcatggtggtt |
41619816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 23239373 - 23239409
Alignment:
| Q |
188 |
tgttgatagtattaaaatggtgaaggtgcttttcttt |
224 |
Q |
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| T |
23239373 |
tgttgatagtattaaaatggtgaaggtgttttccttt |
23239409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 23250459 - 23250495
Alignment:
| Q |
188 |
tgttgatagtattaaaatggtgaaggtgcttttcttt |
224 |
Q |
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| T |
23250459 |
tgttgatagtattaaaatggtgaaggtgttttccttt |
23250495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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