View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13055_low_24 (Length: 290)
Name: NF13055_low_24
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 119 - 280
Target Start/End: Original strand, 4682857 - 4683018
Alignment:
| Q |
119 |
aaggagaatccacagaatcataaagatagtccatatatcttataagcaagacttctagtctaaagaaatctaatggagtttaaatatcatgtgactaaaa |
218 |
Q |
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| T |
4682857 |
aaggaaaatccacagaatcataaagatagtccatatatcttataagcaagacttctagtctaaagaaatctaatggagtttaaatatcatgtgactaaaa |
4682956 |
T |
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| Q |
219 |
tggcatcaagtatttacagtgtgtaaaattccagcacagtgacaaataaatttgaagtataa |
280 |
Q |
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| T |
4682957 |
tggcatcaagtatttacagtgtgtaaaattccagcacagtgacaaataaatttgaagtataa |
4683018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 4682531 - 4682640
Alignment:
| Q |
23 |
caatatgattgatctgggtaacatgagagtaaacactttaaacaagtggaaagagatttgatcactcactcttgcatggaagaaatctggttagaaaagg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4682531 |
caatatgattgatctgggtaacatgagagtaaacactttaaacaagtggaaagagatttgatcactcactcttgcatggaagaaatctggttagaagagg |
4682630 |
T |
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| Q |
123 |
agaatccaca |
132 |
Q |
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| T |
4682631 |
agaattcaca |
4682640 |
T |
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