View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13055_low_26 (Length: 264)
Name: NF13055_low_26
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 30506126 - 30505933
Alignment:
| Q |
56 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtttcctagtttctagttcagtttc |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
30506126 |
tgttagctattgtgtttagaactgctgccacgtctgcagagtttattttacttctgttttgaatcttttaaatatgtttcctagtttctagttcagtttc |
30506027 |
T |
|
| Q |
156 |
ttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctatt |
250 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30506026 |
ttttcctcctagttttcagcaagca-tttttttttagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctatt |
30505933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 28914194 - 28914394
Alignment:
| Q |
51 |
gtttttgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttc |
149 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
28914194 |
gtttctgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttc |
28914293 |
T |
|
| Q |
150 |
agtttcttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctat |
249 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
28914294 |
agttttatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctat |
28914393 |
T |
|
| Q |
250 |
t |
250 |
Q |
| |
|
| |
|
|
| T |
28914394 |
t |
28914394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 26404854 - 26405049
Alignment:
| Q |
56 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
154 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
26404854 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
26404953 |
T |
|
| Q |
155 |
cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctatt |
250 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
26404954 |
tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctatt |
26405049 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 26400556 - 26400751
Alignment:
| Q |
56 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
154 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| |||| |||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
26400556 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctattttgaatattttaaatatgttctcctaatttctagttcagttt |
26400655 |
T |
|
| Q |
155 |
cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctatt |
250 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
26400656 |
tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctatt |
26400751 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 7033625 - 7033820
Alignment:
| Q |
56 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
154 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7033625 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
7033724 |
T |
|
| Q |
155 |
cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctatt |
250 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
7033725 |
tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctatt |
7033820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 7037925 - 7038120
Alignment:
| Q |
56 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
154 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7037925 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
7038024 |
T |
|
| Q |
155 |
cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctatt |
250 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| | ||||||||||||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
7038025 |
tatttcctccttgttttcagcaatcagtttaattctagtattctattgtggcctaacttataggaacatgatattagtgggcagttattttctatt |
7038120 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 1545221 - 1545416
Alignment:
| Q |
56 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
154 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
1545221 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
1545320 |
T |
|
| Q |
155 |
cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctatt |
250 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
1545321 |
tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctatt |
1545416 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 1540923 - 1541118
Alignment:
| Q |
56 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
154 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| |||||||||||||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
1540923 |
tgttaactattgtgtttagaactgctgccacgtttgttgagttcattttaattctattttgaatattttaaatatgttctcctaatttctagtttagttt |
1541022 |
T |
|
| Q |
155 |
cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctatt |
250 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
1541023 |
tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctatt |
1541118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 17793045 - 17793240
Alignment:
| Q |
56 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
154 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
17793045 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
17793144 |
T |
|
| Q |
155 |
cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctatt |
250 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||||| |
|
|
| T |
17793145 |
tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctatt |
17793240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 17797343 - 17797538
Alignment:
| Q |
56 |
tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt |
154 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
17797343 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
17797442 |
T |
|
| Q |
155 |
cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctatt |
250 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||||| |
|
|
| T |
17797443 |
tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctatt |
17797538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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