View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13055_low_3 (Length: 734)
Name: NF13055_low_3
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 22 - 719
Target Start/End: Complemental strand, 43410477 - 43409784
Alignment:
| Q |
22 |
gcatgatcaactcctaaaggagctcctgtagggttttctgtcatcacaacatgatgatggttaatggcagtagtagtagtcataggtaatttgtttcctg |
121 |
Q |
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| T |
43410477 |
gcatgatcaactcctaaaggagctcctgtagggttttctgtcatcacaacatgatgatggttaatggcagtagtagtagtcataggtaatttgtttcctg |
43410378 |
T |
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| Q |
122 |
catgggtctgactgcaagcagagggtggggatttcaaactagtaactattccatctccatggttattattatagaagctattgttgttgttgttatcatt |
221 |
Q |
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| T |
43410377 |
catgggtctgactgcaagcagagggtggggatttcaaactagtaactattccatctccatggttattattatagaagctattgttgctgtt---atcatt |
43410281 |
T |
|
| Q |
222 |
accatcaccaccattagcagttgcagtgctcaactctgggaagctggcatagaaagagccaatctgtatggcaccctctgcaccttgaacagaatcaatc |
321 |
Q |
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| T |
43410280 |
accatcaccaccattagcagttgcattgctcaactctgggaagctggcatagaaagagccaatctgtatggcaccctctgcaccttgaacagaatcaatc |
43410181 |
T |
|
| Q |
322 |
acaagttgtagcttctttaaagagtggcccaccttctttatttttcttgaaggccatcttgtaatcccatgctgtctgcatatccttttcagagttgtag |
421 |
Q |
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| T |
43410180 |
acaagttgtagcttctttaaagagtggcccaccttctttatttttcttgaaggccatcttgtaatcccatgctgtctgcatatccttttcagagttgtag |
43410081 |
T |
|
| Q |
422 |
gacacactgtatcacaaaattattatatatttaattactttcagattgtgattgagatcgagttgttggataataatatccatgacatagttttat---- |
517 |
Q |
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| T |
43410080 |
gacacactgtatcacaaaattat----tatttaattac-ttcagattgtgattgagatcgagttgttggataataatatccatgacatagttttatttaa |
43409986 |
T |
|
| Q |
518 |
ttaattaattaattaaaactgaaattgaattttacaagtcacttaccaccgatgctctttgcagcgtcctttaggcttccggcaaagtattgtctcagaa |
617 |
Q |
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| T |
43409985 |
ttaattaattaattaaaactgaaattgaattttacaagtcacttaccaccgatgctctttgcggcgtcctttaggcttccggcaaagtattgtctcagaa |
43409886 |
T |
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| Q |
618 |
ccggcaagcttatagtcttctccgccttggttcttcgcttgtccccggactttctcccactcgaagaagaagacgaccggcgaccacaggcaccaggaga |
717 |
Q |
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| T |
43409885 |
ccggcaagcttatagtcttctccgccttggttcttcgcttgtccccggactttctcccactcgaagaagaagacgaccggcgaccacaggcaccaggaga |
43409786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 373 - 431
Target Start/End: Complemental strand, 25531416 - 25531358
Alignment:
| Q |
373 |
ggccatcttgtaatcccatgctgtctgcatatccttttcagagttgtaggacacactgt |
431 |
Q |
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| T |
25531416 |
ggccatcttgaaattccatgttgtctgcatattctcttcagagttgttggacaaactgt |
25531358 |
T |
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